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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 500 Members. Sequence cutoff: 90% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 18 P 50S ribosomal protein L19e 272569  
2 1VQO 18 P 50S ribosomal protein L19E 2238  
3 1VQ8 18 P 50S ribosomal protein L19E 2238  
4 1S72 18 P 50S ribosomal protein L19E 2238  
5 1JJ2 17 O RIBOSOMAL PROTEIN L19E 2238  
6 1YHQ 18 P 50S ribosomal protein L19E 2238  
7 1VQP 18 P 50S ribosomal protein L19E 2238  
8 1VQM 18 P 50S ribosomal protein L19E 2238  
9 3CC2 16 P 50S ribosomal protein L19e 2238  
10 1VQL 18 P 50S ribosomal protein L19E 2238  
11 1VQK 18 P 50S ribosomal protein L19E 2238  
12 1VQN 19 P 50S ribosomal protein L19E 2238  
13 1YIJ 18 P 50S ribosomal protein L19E 2238  
14 1YI2 18 P 50S ribosomal protein L19E 2238  
15 1VQ9 18 P 50S ribosomal protein L19E 2238  
16 1VQ7 18 P 50S ribosomal protein L19E 2238  
17 3CCM 16 P 50S ribosomal protein L19e 2238  
18 1VQ5 18 P 50S ribosomal protein L19E 2238  
19 3CCJ 16 P 50S ribosomal protein L19e 2238  
20 3CC7 16 P 50S ribosomal protein L19e 2238  
21 1YIT 22 P 50S RIBOSOMAL PROTEIN L19E 2238  
22 3CCE 16 P 50S ribosomal protein L19e 2238  
23 3G6E 17 P 50S ribosomal protein L19e 2238  
24 3CPW 17 O 50S ribosomal protein L19e 2238  
25 3CCU 16 P 50S ribosomal protein L19e 2238  
26 1VQ6 19 P 50S ribosomal protein L19E 2238  
27 1M90 18 Q RIBOSOMAL PROTEIN L19E 2238  
28 3CCL 16 P 50S ribosomal protein L19e 2238  
29 1YJW 22 P 50S RIBOSOMAL PROTEIN L19E 2238  
30 1YJ9 18 P 50S ribosomal protein L19E 2238  
31 3CD6 16 P 50S ribosomal protein L19e 2238  
32 3CCV 16 P 50S ribosomal protein L19e 2238  
33 3CC4 16 P 50S ribosomal protein L19e 2238  
34 2OTL 17 P 50S ribosomal protein L19e 2238  
35 3G71 17 P 50S ribosomal protein L19e 2238  
36 1FFK 15 M RIBOSOMAL PROTEIN L19 2238  
37 1VQ4 18 P 50S ribosomal protein L19E 2238  
38 1YJN 18 P 50S ribosomal protein L19E 2238  
39 3CMA 16 P 50S ribosomal protein L19e 2238  
40 3CCS 16 P 50S ribosomal protein L19e 2238  
41 3CCQ 16 P 50S ribosomal protein L19e 2238  
42 3I56 16 P 50S ribosomal protein L19e 2238  
43 3CCR 16 P 50S ribosomal protein L19e 2238  
44 2OTJ 17 P 50S ribosomal protein L19e 2238  
45 1KQS 19 O RIBOSOMAL PROTEIN L19E 2238  
46 3OW2 17 O 50S ribosomal protein L19e 2238  
47 3CXC 18 O RIBOSOMAL PROTEIN L19E 2238  
48 1QVG 18 O 50S ribosomal protein L19E 2238  
49 3CME 16 P 50S ribosomal protein L19e 2238  
50 2QEX 17 P 50S ribosomal protein L19e 2238  
51 1KC8 17 Q RIBOSOMAL PROTEIN L19E 2238  
52 1N8R 17 Q 50S ribosomal protein L19E 2238  
53 1Q81 18 Q 50S ribosomal protein L19E 2238  
54 1Q82 18 Q 50S ribosomal protein L19E 2238  
55 1QVF 18 O 50S ribosomal protein L19E 2238  
56 1NJI 17 Q 50S ribosomal protein L19E 2238  
57 1K73 17 Q RIBOSOMAL PROTEIN L19E 2238  
58 1K9M 17 Q RIBOSOMAL PROTEIN L19E 2238  
59 1KD1 17 Q RIBOSOMAL PROTEIN L19E 2238  
60 3I55 17 P 50S ribosomal protein L19e 2238  
61 1K8A 17 Q RIBOSOMAL PROTEIN L19E 2238  
62 1Q86 18 Q 50S ribosomal protein L19E 2238  
63 1M1K 17 Q RIBOSOMAL PROTEIN L19E 2238  
64 3G4S 17 P 50S ribosomal protein L19e 2238  
65 1W2B 20 O 50S RIBOSOMAL PROTEIN L19E 2238  
66 2QA4 18 P 50S ribosomal protein L19e 2238  
67 1Q7Y 18 Q 50S ribosomal protein L19E 2238  
68 4ADX 26 P RPL19E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 672
95% 36 68 478
90% 36 68 502
70% 36 68 540
50% 36 123 236
40% 36 123 263
30% 41 358 45
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49933
95% 1 1 34996
90% 1 1 33434
70% 36 68 533
50% 36 121 244
40% 36 121 269
30% 36 121 286
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 418
90% 36 74 444
70% 36 74 476
50% 36 74 529
40% 36 74 569
30% 40 350 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 416
90% 36 74 442
70% 36 74 473
50% 36 76 500
40% 36 76 543
30% 36 78 528
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 480
90% 36 68 505
70% 36 68 543
50% 36 70 586
40% 36 70 623
30% 36 70 624
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1734
95% 36 68 476
90% 36 68 500
70% 36 68 538
50% 36 68 620
40% 36 70 622
30% 36 71 604
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 482
90% 36 68 507
70% 36 68 546
50% 36 70 589
40% 36 70 627
30% 36 71 606
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 474
90% 36 68 498
70% 36 68 536
50% 36 68 617
40% 36 68 651
30% 36 124 275
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 421
90% 36 74 447
70% 36 74 480
50% 36 76 504
40% 36 78 525
30% 40 307 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 420
90% 36 74 446
70% 36 74 479
50% 36 130 222
40% 36 130 247
30% 36 130 262
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 316
95% 34 70 460
90% 34 70 481
70% 34 70 516
50% 34 70 591
40% 34 70 629
30% 34 70 627
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 296
95% 36 74 422
90% 36 74 448
70% 36 74 481
50% 36 74 533
40% 36 74 573
30% 36 74 566
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 475
90% 36 68 499
70% 36 68 537
50% 36 68 618
40% 36 70 621
30% 36 71 603
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 484
90% 36 68 509
70% 36 68 548
50% 36 68 624
40% 36 68 657
30% 36 68 654
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52947
95% 3 5 11671
90% 3 5 11482
70% 3 5 10852
50% 3 5 9743
40% 3 5 8894
30% 3 5 7776
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58675
95% 1 1 40873
90% 1 1 39051
70% 3 21 2343
50% 7 30 1591
40% 7 79 408
30% 26 102 333
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 486
90% 36 68 511
70% 36 68 550
50% 36 69 609
40% 36 69 644
30% 36 69 641
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59978
95% 36 68 487
90% 36 68 512
70% 36 68 551
50% 36 123 237
40% 36 123 264
30% 36 123 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 483
90% 36 68 508
70% 36 68 547
50% 36 68 623
40% 36 68 656
30% 36 122 284
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 473
90% 36 68 497
70% 36 68 535
50% 36 68 616
40% 36 122 266
30% 41 353 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1717
95% 36 68 471
90% 36 68 494
70% 36 68 532
50% 36 121 243
40% 36 123 262
30% 36 123 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44077
95% 36 74 409
90% 36 74 435
70% 36 74 468
50% 36 74 520
40% 36 127 254
30% 36 127 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8108
95% 36 74 413
90% 36 74 439
70% 36 74 472
50% 36 74 522
40% 36 76 539
30% 36 77 533
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 417
90% 36 74 443
70% 36 74 474
50% 36 74 527
40% 36 128 250
30% 36 128 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1745
95% 3 21 2285
90% 36 68 504
70% 36 68 542
50% 51 95 313
40% 58 105 294
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51959
95% 1 1 36125
90% 1 7 8305
70% 3 27 1721
50% 36 74 528
40% 36 79 512
30% 36 79 520
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 419
90% 36 74 445
70% 36 74 478
50% 36 74 531
40% 37 77 532
30% 37 78 529
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.