Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 827
95 % 36 68 653
90 % 36 68 682
70 % 36 68 727
50 % 36 175 201
40 % 36 175 222
30 % 44 509 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58549
95 % 1 1 40812
90 % 1 1 38857
70 % 36 68 719
50 % 36 171 206
40 % 36 171 230
30 % 36 171 236
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 416
95 % 36 74 577
90 % 36 74 608
70 % 36 74 639
50 % 36 74 688
40 % 36 74 727
30 % 43 491 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 414
95 % 36 74 575
90 % 36 74 606
70 % 36 74 636
50 % 36 76 661
40 % 36 76 702
30 % 36 79 674
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 465
95 % 36 68 654
90 % 36 68 684
70 % 36 68 729
50 % 36 70 751
40 % 36 70 788
30 % 36 70 781
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2158
95 % 36 68 652
90 % 36 68 680
70 % 36 68 725
50 % 36 68 779
40 % 36 72 754
30 % 36 72 749
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 657
90 % 36 68 686
70 % 36 68 732
50 % 36 70 754
40 % 36 70 791
30 % 36 71 762
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 482
95 % 36 68 650
90 % 36 68 678
70 % 36 68 722
50 % 36 68 776
40 % 36 68 813
30 % 36 174 230
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 422
95 % 36 74 582
90 % 36 74 612
70 % 36 74 645
50 % 36 76 665
40 % 36 78 681
30 % 43 399 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 420
95 % 36 74 580
90 % 36 74 611
70 % 36 74 644
50 % 36 179 195
40 % 36 179 213
30 % 36 179 225
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 447
95 % 34 70 628
90 % 34 70 656
70 % 34 70 703
50 % 34 70 756
40 % 34 70 795
30 % 34 70 787
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 423
95 % 36 74 583
90 % 36 74 613
70 % 36 74 646
50 % 36 74 693
40 % 36 74 730
30 % 36 74 726
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 463
95 % 36 68 651
90 % 36 68 679
70 % 36 68 723
50 % 36 68 777
40 % 36 70 785
30 % 36 71 759
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 469
95 % 36 68 659
90 % 36 68 688
70 % 36 68 734
50 % 36 68 782
40 % 36 68 817
30 % 36 68 808
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61882
95 % 3 5 13836
90 % 3 5 13582
70 % 3 5 12745
50 % 3 5 11385
40 % 3 5 10328
30 % 3 5 8968
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68168
95 % 1 1 47244
90 % 1 1 44917
70 % 3 21 2827
50 % 7 30 1894
40 % 7 128 298
30 % 26 151 269
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 470
95 % 36 68 660
90 % 36 68 689
70 % 36 68 736
50 % 36 69 766
40 % 36 69 807
30 % 36 69 800
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69569
95 % 36 68 661
90 % 36 68 690
70 % 36 68 737
50 % 36 172 203
40 % 36 172 228
30 % 36 172 234
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 468
95 % 36 68 658
90 % 36 68 687
70 % 36 68 733
50 % 36 68 781
40 % 36 68 816
30 % 36 168 242
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 462
95 % 36 68 649
90 % 36 68 677
70 % 36 68 721
50 % 36 68 775
40 % 36 173 224
30 % 44 500 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2141
95 % 36 68 647
90 % 36 68 675
70 % 36 68 718
50 % 36 170 205
40 % 36 172 227
30 % 36 172 232
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51833
95 % 36 74 567
90 % 36 74 599
70 % 36 74 631
50 % 36 74 682
40 % 36 179 211
30 % 36 179 222
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9754
95 % 36 74 571
90 % 36 74 604
70 % 36 74 635
50 % 36 74 684
40 % 36 76 700
30 % 37 78 682
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 415
95 % 36 74 576
90 % 36 74 607
70 % 36 74 637
50 % 36 74 686
40 % 37 179 212
30 % 37 179 224
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2169
95 % 3 21 2798
90 % 36 68 683
70 % 36 68 728
50 % 51 105 319
40 % 58 122 276
30 % 58 124 277
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60793
95 % 1 1 42063
90 % 1 7 9846
70 % 3 27 2105
50 % 36 74 687
40 % 36 79 670
30 % 36 79 676
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 578
90 % 36 74 609
70 % 36 74 642
50 % 36 74 692
40 % 37 77 693
30 % 37 78 685

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 18 P 50S ribosomal protein L19e 2238
2 1VQO 18 P 50S ribosomal protein L19E 2238
3 1VQ8 18 P 50S ribosomal protein L19E 2238
4 1S72 18 P 50S ribosomal protein L19E 2238
5 1JJ2 17 O RIBOSOMAL PROTEIN L19E 2238
6 1YHQ 18 P 50S ribosomal protein L19E 2238
7 1VQP 18 P 50S ribosomal protein L19E 2238
8 1VQM 18 P 50S ribosomal protein L19E 2238
9 3CC2 16 P 50S ribosomal protein L19e 2238
10 1VQL 18 P 50S ribosomal protein L19E 2238
11 1VQK 18 P 50S ribosomal protein L19E 2238
12 1VQN 19 P 50S ribosomal protein L19E 2238
13 1YIJ 18 P 50S ribosomal protein L19E 2238
14 1YI2 18 P 50S ribosomal protein L19E 2238
15 1VQ9 18 P 50S ribosomal protein L19E 2238
16 1VQ7 18 P 50S ribosomal protein L19E 2238
17 3CCM 16 P 50S ribosomal protein L19e 2238
18 1VQ5 18 P 50S ribosomal protein L19E 2238
19 3CCJ 16 P 50S ribosomal protein L19e 2238
20 3CC7 16 P 50S ribosomal protein L19e 2238
21 1YIT 22 P 50S RIBOSOMAL PROTEIN L19E 2238
22 3CCE 16 P 50S ribosomal protein L19e 2238
23 3G6E 17 P 50S ribosomal protein L19e 2238
24 3CPW 17 O 50S ribosomal protein L19e 2238
25 3CCU 16 P 50S ribosomal protein L19e 2238
26 1VQ6 19 P 50S ribosomal protein L19E 2238
27 1M90 18 Q RIBOSOMAL PROTEIN L19E 2238
28 3CCL 16 P 50S ribosomal protein L19e 2238
29 1YJW 22 P 50S RIBOSOMAL PROTEIN L19E 2238
30 1YJ9 18 P 50S ribosomal protein L19E 2238
31 3CD6 16 P 50S ribosomal protein L19e 2238
32 3CCV 16 P 50S ribosomal protein L19e 2238
33 3CC4 16 P 50S ribosomal protein L19e 2238
34 2OTL 17 P 50S ribosomal protein L19e 2238
35 3G71 17 P 50S ribosomal protein L19e 2238
36 1FFK 15 M RIBOSOMAL PROTEIN L19 2238
37 1VQ4 18 P 50S ribosomal protein L19E 2238
38 1YJN 18 P 50S ribosomal protein L19E 2238
39 3CMA 16 P 50S ribosomal protein L19e 2238
40 3CCS 16 P 50S ribosomal protein L19e 2238
41 3CCQ 16 P 50S ribosomal protein L19e 2238
42 3I56 16 P 50S ribosomal protein L19e 2238
43 3CCR 16 P 50S ribosomal protein L19e 2238
44 2OTJ 17 P 50S ribosomal protein L19e 2238
45 1KQS 19 O RIBOSOMAL PROTEIN L19E 2238
46 3OW2 17 O 50S ribosomal protein L19e 2238
47 3CXC 18 O RIBOSOMAL PROTEIN L19E 2238
48 1QVG 18 O 50S ribosomal protein L19E 2238
49 3CME 16 P 50S ribosomal protein L19e 2238
50 2QEX 17 P 50S ribosomal protein L19e 2238
51 1KC8 17 Q RIBOSOMAL PROTEIN L19E 2238
52 1N8R 17 Q 50S ribosomal protein L19E 2238
53 1Q81 18 Q 50S ribosomal protein L19E 2238
54 1Q82 18 Q 50S ribosomal protein L19E 2238
55 1QVF 18 O 50S ribosomal protein L19E 2238
56 1NJI 17 Q 50S ribosomal protein L19E 2238
57 1K73 17 Q RIBOSOMAL PROTEIN L19E 2238
58 1K9M 17 Q RIBOSOMAL PROTEIN L19E 2238
59 1KD1 17 Q RIBOSOMAL PROTEIN L19E 2238
60 3I55 17 P 50S ribosomal protein L19e 2238
61 1K8A 17 Q RIBOSOMAL PROTEIN L19E 2238
62 1Q86 18 Q 50S ribosomal protein L19E 2238
63 1M1K 17 Q RIBOSOMAL PROTEIN L19E 2238
64 3G4S 17 P 50S ribosomal protein L19e 2238
65 1W2B 20 O 50S RIBOSOMAL PROTEIN L19E 2238
66 2QA4 18 P 50S ribosomal protein L19e 2238
67 1Q7Y 18 Q 50S ribosomal protein L19E 2238
68 4ADX 26 P RPL19E 145262