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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 537 Members. Sequence cutoff: 70% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 18 P 50S ribosomal protein L19e 272569  
2 1VQO 18 P 50S ribosomal protein L19E 2238  
3 1VQ8 18 P 50S ribosomal protein L19E 2238  
4 1S72 18 P 50S ribosomal protein L19E 2238  
5 1JJ2 17 O RIBOSOMAL PROTEIN L19E 2238  
6 1YHQ 18 P 50S ribosomal protein L19E 2238  
7 1VQP 18 P 50S ribosomal protein L19E 2238  
8 1VQM 18 P 50S ribosomal protein L19E 2238  
9 3CC2 16 P 50S ribosomal protein L19e 2238  
10 1VQL 18 P 50S ribosomal protein L19E 2238  
11 1VQK 18 P 50S ribosomal protein L19E 2238  
12 1VQN 19 P 50S ribosomal protein L19E 2238  
13 1YIJ 18 P 50S ribosomal protein L19E 2238  
14 1YI2 18 P 50S ribosomal protein L19E 2238  
15 1VQ9 18 P 50S ribosomal protein L19E 2238  
16 1VQ7 18 P 50S ribosomal protein L19E 2238  
17 3CCM 16 P 50S ribosomal protein L19e 2238  
18 1VQ5 18 P 50S ribosomal protein L19E 2238  
19 3CCJ 16 P 50S ribosomal protein L19e 2238  
20 3CC7 16 P 50S ribosomal protein L19e 2238  
21 1YIT 22 P 50S RIBOSOMAL PROTEIN L19E 2238  
22 3CCE 16 P 50S ribosomal protein L19e 2238  
23 3G6E 17 P 50S ribosomal protein L19e 2238  
24 3CPW 17 O 50S ribosomal protein L19e 2238  
25 3CCU 16 P 50S ribosomal protein L19e 2238  
26 1VQ6 19 P 50S ribosomal protein L19E 2238  
27 1M90 18 Q RIBOSOMAL PROTEIN L19E 2238  
28 3CCL 16 P 50S ribosomal protein L19e 2238  
29 1YJW 22 P 50S RIBOSOMAL PROTEIN L19E 2238  
30 1YJ9 18 P 50S ribosomal protein L19E 2238  
31 3CD6 16 P 50S ribosomal protein L19e 2238  
32 3CCV 16 P 50S ribosomal protein L19e 2238  
33 3CC4 16 P 50S ribosomal protein L19e 2238  
34 2OTL 17 P 50S ribosomal protein L19e 2238  
35 3G71 17 P 50S ribosomal protein L19e 2238  
36 1FFK 15 M RIBOSOMAL PROTEIN L19 2238  
37 1VQ4 18 P 50S ribosomal protein L19E 2238  
38 1YJN 18 P 50S ribosomal protein L19E 2238  
39 3CMA 16 P 50S ribosomal protein L19e 2238  
40 3CCS 16 P 50S ribosomal protein L19e 2238  
41 3CCQ 16 P 50S ribosomal protein L19e 2238  
42 3I56 16 P 50S ribosomal protein L19e 2238  
43 3CCR 16 P 50S ribosomal protein L19e 2238  
44 2OTJ 17 P 50S ribosomal protein L19e 2238  
45 1KQS 19 O RIBOSOMAL PROTEIN L19E 2238  
46 3OW2 17 O 50S ribosomal protein L19e 2238  
47 3CXC 18 O RIBOSOMAL PROTEIN L19E 2238  
48 1QVG 18 O 50S ribosomal protein L19E 2238  
49 3CME 16 P 50S ribosomal protein L19e 2238  
50 2QEX 17 P 50S ribosomal protein L19e 2238  
51 1KC8 17 Q RIBOSOMAL PROTEIN L19E 2238  
52 1N8R 17 Q 50S ribosomal protein L19E 2238  
53 1Q81 18 Q 50S ribosomal protein L19E 2238  
54 1Q82 18 Q 50S ribosomal protein L19E 2238  
55 1QVF 18 O 50S ribosomal protein L19E 2238  
56 1NJI 17 Q 50S ribosomal protein L19E 2238  
57 1K73 17 Q RIBOSOMAL PROTEIN L19E 2238  
58 1K9M 17 Q RIBOSOMAL PROTEIN L19E 2238  
59 1KD1 17 Q RIBOSOMAL PROTEIN L19E 2238  
60 3I55 17 P 50S ribosomal protein L19e 2238  
61 1K8A 17 Q RIBOSOMAL PROTEIN L19E 2238  
62 1Q86 18 Q 50S ribosomal protein L19E 2238  
63 1M1K 17 Q RIBOSOMAL PROTEIN L19E 2238  
64 3G4S 17 P 50S ribosomal protein L19e 2238  
65 1W2B 20 O 50S RIBOSOMAL PROTEIN L19E 2238  
66 2QA4 18 P 50S ribosomal protein L19e 2238  
67 1Q7Y 18 Q 50S ribosomal protein L19E 2238  
68 4ADX 26 P RPL19E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 671
95% 36 68 476
90% 36 68 500
70% 36 68 539
50% 36 122 239
40% 36 122 263
30% 41 346 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49681
95% 1 1 34826
90% 1 1 33272
70% 36 68 532
50% 36 120 245
40% 36 120 269
30% 36 120 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 418
90% 36 74 443
70% 36 74 474
50% 36 74 524
40% 36 74 566
30% 40 338 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 416
90% 36 74 441
70% 36 74 471
50% 36 76 499
40% 36 76 540
30% 36 78 524
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 478
90% 36 68 503
70% 36 68 542
50% 36 70 582
40% 36 70 618
30% 36 70 618
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1725
95% 36 68 474
90% 36 68 498
70% 36 68 537
50% 36 68 617
40% 36 70 617
30% 36 71 595
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 480
90% 36 68 505
70% 36 68 544
50% 36 70 585
40% 36 70 622
30% 36 71 598
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 472
90% 36 68 496
70% 36 68 535
50% 36 68 614
40% 36 68 649
30% 36 123 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 421
90% 36 74 446
70% 36 74 478
50% 36 76 501
40% 36 78 521
30% 40 296 67
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 420
90% 36 74 445
70% 36 74 477
50% 36 129 222
40% 36 129 248
30% 36 129 264
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 315
95% 34 70 457
90% 34 70 479
70% 34 70 515
50% 34 70 586
40% 34 70 623
30% 34 70 620
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 422
90% 36 74 447
70% 36 74 479
50% 36 74 527
40% 36 74 568
30% 36 74 561
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 473
90% 36 68 497
70% 36 68 536
50% 36 68 615
40% 36 70 616
30% 36 71 594
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 482
90% 36 68 507
70% 36 68 546
50% 36 68 621
40% 36 68 654
30% 36 68 648
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52683
95% 3 5 11617
90% 3 5 11427
70% 3 5 10807
50% 3 5 9703
40% 3 5 8858
30% 3 5 7746
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58398
95% 1 1 40698
90% 1 1 38882
70% 3 21 2329
50% 7 30 1583
40% 7 78 410
30% 26 101 335
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 484
90% 36 68 509
70% 36 68 548
50% 36 69 604
40% 36 69 641
30% 36 69 635
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59698
95% 36 68 485
90% 36 68 510
70% 36 68 550
50% 36 122 240
40% 36 122 264
30% 36 122 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 481
90% 36 68 506
70% 36 68 545
50% 36 68 620
40% 36 68 653
30% 36 121 284
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 471
90% 36 68 495
70% 36 68 534
50% 36 68 612
40% 36 121 267
30% 41 341 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1708
95% 36 68 469
90% 36 68 493
70% 36 68 531
50% 36 120 244
40% 36 122 262
30% 36 122 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43842
95% 36 74 409
90% 36 74 434
70% 36 74 467
50% 36 74 517
40% 36 126 254
30% 36 126 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8052
95% 36 74 413
90% 36 74 438
70% 36 74 470
50% 36 74 519
40% 36 76 537
30% 36 77 531
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 417
90% 36 74 442
70% 36 74 472
50% 36 74 522
40% 36 127 253
30% 36 127 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1736
95% 3 21 2276
90% 36 68 502
70% 36 68 541
50% 51 95 312
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51697
95% 1 1 35956
90% 1 7 8263
70% 3 27 1709
50% 36 74 523
40% 36 79 508
30% 36 79 516
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 419
90% 36 74 444
70% 36 74 475
50% 36 74 526
40% 37 77 531
30% 37 78 526
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.