Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 743
95 % 36 68 528
90 % 36 68 556
70 % 36 68 610
50 % 36 143 219
40 % 36 143 251
30 % 44 430 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54454
95 % 1 1 38027
90 % 1 1 36226
70 % 36 68 604
50 % 36 138 229
40 % 36 138 260
30 % 36 138 271
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 464
90 % 36 74 491
70 % 36 74 535
50 % 36 74 624
40 % 36 74 668
30 % 43 419 40
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 462
90 % 36 74 489
70 % 36 74 532
50 % 36 76 597
40 % 36 76 642
30 % 36 78 620
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 530
90 % 36 68 559
70 % 36 68 612
50 % 36 70 675
40 % 36 70 717
30 % 36 70 719
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1934
95 % 36 68 527
90 % 36 68 555
70 % 36 68 609
50 % 36 68 703
40 % 36 70 714
30 % 36 71 700
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 531
90 % 36 68 560
70 % 36 68 613
50 % 36 70 677
40 % 36 70 719
30 % 36 71 703
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 365
95 % 36 68 525
90 % 36 68 553
70 % 36 68 607
50 % 36 68 700
40 % 36 68 734
30 % 36 142 261
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 470
90 % 36 74 498
70 % 36 74 542
50 % 36 76 599
40 % 36 78 616
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 314
95 % 36 74 468
90 % 36 74 496
70 % 36 74 540
50 % 36 147 213
40 % 36 147 242
30 % 36 147 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 341
95 % 34 70 508
90 % 34 70 533
70 % 34 70 585
50 % 34 70 678
40 % 34 70 720
30 % 34 70 721
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 471
90 % 36 74 499
70 % 36 74 543
50 % 36 74 631
40 % 36 74 673
30 % 36 74 667
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 352
95 % 36 68 526
90 % 36 68 554
70 % 36 68 608
50 % 36 68 701
40 % 36 70 713
30 % 36 71 699
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 533
90 % 36 68 562
70 % 36 68 615
50 % 36 68 705
40 % 36 68 737
30 % 36 68 739
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57603
95 % 3 5 12824
90 % 3 5 12579
70 % 3 5 11835
50 % 3 5 10608
40 % 3 5 9678
30 % 3 5 8424
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63603
95 % 1 1 44150
90 % 1 1 42065
70 % 3 21 2577
50 % 7 30 1734
40 % 7 96 366
30 % 26 119 318
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 535
90 % 36 68 564
70 % 36 68 617
50 % 36 69 691
40 % 36 69 729
30 % 36 69 734
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64947
95 % 36 68 537
90 % 36 68 565
70 % 36 68 618
50 % 36 140 224
40 % 36 140 257
30 % 36 140 267
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 68 704
40 % 36 68 736
30 % 36 137 274
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 524
90 % 36 68 552
70 % 36 68 606
50 % 36 68 699
40 % 36 142 252
30 % 44 425 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1911
95 % 36 68 522
90 % 36 68 550
70 % 36 68 603
50 % 36 138 228
40 % 36 140 256
30 % 36 140 266
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48144
95 % 36 74 454
90 % 36 74 482
70 % 36 74 527
50 % 36 74 616
40 % 36 147 239
30 % 36 147 250
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8954
95 % 36 74 457
90 % 36 74 485
70 % 36 74 530
50 % 36 74 619
40 % 36 76 641
30 % 36 77 628
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 463
90 % 36 74 490
70 % 36 74 533
50 % 36 74 622
40 % 37 147 240
30 % 37 147 251
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1945
95 % 3 21 2521
90 % 36 68 558
70 % 36 68 611
50 % 51 96 346
40 % 58 110 307
30 % 58 112 323
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56580
95 % 1 1 39211
90 % 1 7 9107
70 % 3 27 1893
50 % 36 74 623
40 % 36 79 603
30 % 36 79 608
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 465
90 % 36 74 493
70 % 36 74 537
50 % 36 74 627
40 % 37 77 627
30 % 37 78 623

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 18 P 50S ribosomal protein L19e 2238
2 1VQO 18 P 50S ribosomal protein L19E 2238
3 1VQ8 18 P 50S ribosomal protein L19E 2238
4 1S72 18 P 50S ribosomal protein L19E 2238
5 1JJ2 17 O RIBOSOMAL PROTEIN L19E 2238
6 1YHQ 18 P 50S ribosomal protein L19E 2238
7 1VQP 18 P 50S ribosomal protein L19E 2238
8 1VQM 18 P 50S ribosomal protein L19E 2238
9 3CC2 16 P 50S ribosomal protein L19e 2238
10 1VQL 18 P 50S ribosomal protein L19E 2238
11 1VQK 18 P 50S ribosomal protein L19E 2238
12 1VQN 19 P 50S ribosomal protein L19E 2238
13 1YIJ 18 P 50S ribosomal protein L19E 2238
14 1YI2 18 P 50S ribosomal protein L19E 2238
15 1VQ9 18 P 50S ribosomal protein L19E 2238
16 1VQ7 18 P 50S ribosomal protein L19E 2238
17 3CCM 16 P 50S ribosomal protein L19e 2238
18 1VQ5 18 P 50S ribosomal protein L19E 2238
19 3CCJ 16 P 50S ribosomal protein L19e 2238
20 3CC7 16 P 50S ribosomal protein L19e 2238
21 1YIT 22 P 50S RIBOSOMAL PROTEIN L19E 2238
22 3CCE 16 P 50S ribosomal protein L19e 2238
23 3G6E 17 P 50S ribosomal protein L19e 2238
24 3CPW 17 O 50S ribosomal protein L19e 2238
25 3CCU 16 P 50S ribosomal protein L19e 2238
26 1VQ6 19 P 50S ribosomal protein L19E 2238
27 1M90 18 Q RIBOSOMAL PROTEIN L19E 2238
28 3CCL 16 P 50S ribosomal protein L19e 2238
29 1YJW 22 P 50S RIBOSOMAL PROTEIN L19E 2238
30 1YJ9 18 P 50S ribosomal protein L19E 2238
31 3CD6 16 P 50S ribosomal protein L19e 2238
32 3CCV 16 P 50S ribosomal protein L19e 2238
33 3CC4 16 P 50S ribosomal protein L19e 2238
34 2OTL 17 P 50S ribosomal protein L19e 2238
35 3G71 17 P 50S ribosomal protein L19e 2238
36 1FFK 15 M RIBOSOMAL PROTEIN L19 2238
37 1VQ4 18 P 50S ribosomal protein L19E 2238
38 1YJN 18 P 50S ribosomal protein L19E 2238
39 3CMA 16 P 50S ribosomal protein L19e 2238
40 3CCS 16 P 50S ribosomal protein L19e 2238
41 3CCQ 16 P 50S ribosomal protein L19e 2238
42 3I56 16 P 50S ribosomal protein L19e 2238
43 3CCR 16 P 50S ribosomal protein L19e 2238
44 2OTJ 17 P 50S ribosomal protein L19e 2238
45 1KQS 19 O RIBOSOMAL PROTEIN L19E 2238
46 3OW2 17 O 50S ribosomal protein L19e 2238
47 3CXC 18 O RIBOSOMAL PROTEIN L19E 2238
48 1QVG 18 O 50S ribosomal protein L19E 2238
49 3CME 16 P 50S ribosomal protein L19e 2238
50 2QEX 17 P 50S ribosomal protein L19e 2238
51 1KC8 17 Q RIBOSOMAL PROTEIN L19E 2238
52 1N8R 17 Q 50S ribosomal protein L19E 2238
53 1Q81 18 Q 50S ribosomal protein L19E 2238
54 1Q82 18 Q 50S ribosomal protein L19E 2238
55 1QVF 18 O 50S ribosomal protein L19E 2238
56 1NJI 17 Q 50S ribosomal protein L19E 2238
57 1K73 17 Q RIBOSOMAL PROTEIN L19E 2238
58 1K9M 17 Q RIBOSOMAL PROTEIN L19E 2238
59 1KD1 17 Q RIBOSOMAL PROTEIN L19E 2238
60 3I55 17 P 50S ribosomal protein L19e 2238
61 1K8A 17 Q RIBOSOMAL PROTEIN L19E 2238
62 1Q86 18 Q 50S ribosomal protein L19E 2238
63 1M1K 17 Q RIBOSOMAL PROTEIN L19E 2238
64 3G4S 17 P 50S ribosomal protein L19e 2238
65 1W2B 20 O 50S RIBOSOMAL PROTEIN L19E 2238
66 2QA4 18 P 50S ribosomal protein L19e 2238
67 1Q7Y 18 Q 50S ribosomal protein L19E 2238
68 4V4N 4 AQ 50S ribosomal protein L19E SEE REMARK 999 2190
69 4V6U 49 BQ 50S ribosomal protein L19e 2261
70 4ADX 26 P RPL19E 145262