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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 582 Members. Sequence cutoff: 40% Cluster size: 70 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 18 P 50S ribosomal protein L19e 272569  
2 1VQO 18 P 50S ribosomal protein L19E 2238  
3 1VQ8 18 P 50S ribosomal protein L19E 2238  
4 1S72 18 P 50S ribosomal protein L19E 2238  
5 1JJ2 17 O RIBOSOMAL PROTEIN L19E 2238  
6 1YHQ 18 P 50S ribosomal protein L19E 2238  
7 1VQP 18 P 50S ribosomal protein L19E 2238  
8 1VQM 18 P 50S ribosomal protein L19E 2238  
9 3CC2 16 P 50S ribosomal protein L19e 2238  
10 1VQL 18 P 50S ribosomal protein L19E 2238  
11 1VQK 18 P 50S ribosomal protein L19E 2238  
12 1VQN 19 P 50S ribosomal protein L19E 2238  
13 1YIJ 18 P 50S ribosomal protein L19E 2238  
14 1YI2 18 P 50S ribosomal protein L19E 2238  
15 1VQ9 18 P 50S ribosomal protein L19E 2238  
16 1VQ7 18 P 50S ribosomal protein L19E 2238  
17 3CCM 16 P 50S ribosomal protein L19e 272569  
18 1VQ5 18 P 50S ribosomal protein L19E 2238  
19 3CCJ 16 P 50S ribosomal protein L19e 272569  
20 3CC7 16 P 50S ribosomal protein L19e 2238  
21 1YIT 22 P 50S RIBOSOMAL PROTEIN L19E 2238  
22 3CCE 16 P 50S ribosomal protein L19e 272569  
23 3G6E 17 P 50S ribosomal protein L19e 2238  
24 3CPW 17 O 50S ribosomal protein L19e 272569  
25 3CCU 16 P 50S ribosomal protein L19e 272569  
26 1VQ6 19 P 50S ribosomal protein L19E 2238  
27 1M90 18 Q RIBOSOMAL PROTEIN L19E 2238  
28 3CCL 16 P 50S ribosomal protein L19e 272569  
29 1YJW 22 P 50S RIBOSOMAL PROTEIN L19E 2238  
30 1YJ9 18 P 50S ribosomal protein L19E 2238  
31 3CD6 16 P 50S ribosomal protein L19e 272569  
32 3CCV 16 P 50S ribosomal protein L19e 272569  
33 3CC4 16 P 50S ribosomal protein L19e 272569  
34 2OTL 17 P 50S ribosomal protein L19e 2238  
35 3G71 17 P 50S ribosomal protein L19e 2238  
36 1FFK 15 M RIBOSOMAL PROTEIN L19 2238  
37 1VQ4 18 P 50S ribosomal protein L19E 2238  
38 1YJN 18 P 50S ribosomal protein L19E 2238  
39 3CMA 16 P 50S ribosomal protein L19e 2238  
40 3CCS 16 P 50S ribosomal protein L19e 272569  
41 3CCQ 16 P 50S ribosomal protein L19e 272569  
42 3I56 16 P 50S ribosomal protein L19e 2238  
43 3CCR 16 P 50S ribosomal protein L19e 272569  
44 2OTJ 17 P 50S ribosomal protein L19e 2238  
45 1KQS 19 O RIBOSOMAL PROTEIN L19E 2238  
46 3OW2 17 O 50S ribosomal protein L19e 2238  
47 3CXC 18 O RIBOSOMAL PROTEIN L19E 2238  
48 1QVG 18 O 50S ribosomal protein L19E 2238  
49 3CME 16 P 50S ribosomal protein L19e 2238  
50 2QEX 17 P 50S ribosomal protein L19e 2238  
51 1KC8 17 Q RIBOSOMAL PROTEIN L19E 2238  
52 1N8R 17 Q 50S ribosomal protein L19E 2238  
53 1Q81 18 Q 50S ribosomal protein L19E 2238  
54 1Q82 18 Q 50S ribosomal protein L19E 2238  
55 1QVF 18 O 50S ribosomal protein L19E 2238  
56 1NJI 17 Q 50S ribosomal protein L19E 2238  
57 1K73 17 Q RIBOSOMAL PROTEIN L19E 2238  
58 1K9M 17 Q RIBOSOMAL PROTEIN L19E 2238  
59 1KD1 17 Q RIBOSOMAL PROTEIN L19E 2238  
60 3I55 17 P 50S ribosomal protein L19e 2238  
61 1K8A 17 Q RIBOSOMAL PROTEIN L19E 2238  
62 1Q86 18 Q 50S ribosomal protein L19E 2238  
63 1M1K 17 Q RIBOSOMAL PROTEIN L19E 2238  
64 3G4S 17 P 50S ribosomal protein L19e 2238  
65 1W2B 20 O 50S RIBOSOMAL PROTEIN L19E 2238  
66 2QA4 18 P 50S ribosomal protein L19e 2238  
67 1Q7Y 18 Q 50S ribosomal protein L19E 2238  
68 4V4N 4 AQ 50S ribosomal protein L19E SEE REMARK 999 2190  
69 4V6U 49 BQ 50S ribosomal protein L19e 186497  
70 4ADX 26 P RPL19E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 631
95% 36 68 463
90% 36 68 486
70% 36 68 522
50% 36 118 234
40% 36 118 263
30% 38 320 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48113
95% 1 1 33762
90% 1 1 32280
70% 36 68 515
50% 36 116 240
40% 36 116 271
30% 36 116 293
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 408
90% 36 74 432
70% 36 74 461
50% 36 74 507
40% 36 74 544
30% 37 312 55
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 406
90% 36 74 430
70% 36 74 459
50% 36 76 486
40% 36 76 520
30% 36 78 512
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 465
90% 36 68 489
70% 36 68 525
50% 36 70 549
40% 36 70 583
30% 36 70 583
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1663
95% 36 68 461
90% 36 68 484
70% 36 68 520
50% 36 68 583
40% 36 70 582
30% 36 71 564
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 467
90% 36 68 491
70% 36 68 527
50% 36 70 552
40% 36 70 587
30% 36 71 566
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 459
90% 36 68 482
70% 36 68 518
50% 36 68 580
40% 36 68 614
30% 36 119 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 76 488
40% 36 78 503
30% 37 274 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 410
90% 36 74 434
70% 36 74 464
50% 36 125 220
40% 36 125 248
30% 36 125 263
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 308
95% 34 70 445
90% 34 70 465
70% 34 70 500
50% 34 70 553
40% 34 70 588
30% 34 70 585
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 412
90% 36 74 436
70% 36 74 466
50% 36 74 510
40% 36 74 546
30% 36 74 543
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 460
90% 36 68 483
70% 36 68 519
50% 36 68 581
40% 36 70 581
30% 36 71 563
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 469
90% 36 68 493
70% 36 68 529
50% 36 68 588
40% 36 68 621
30% 36 68 614
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51060
95% 3 5 11294
90% 3 5 11114
70% 3 5 10501
50% 3 5 9441
40% 3 5 8612
30% 3 5 7552
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56660
95% 1 1 39523
90% 1 1 37797
70% 3 21 2250
50% 7 30 1530
40% 7 74 412
30% 26 97 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 471
90% 36 68 495
70% 36 68 531
50% 36 69 567
40% 36 69 606
30% 36 69 601
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57931
95% 36 68 472
90% 36 68 496
70% 36 68 532
50% 36 118 235
40% 36 118 264
30% 36 118 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 468
90% 36 68 492
70% 36 68 528
50% 36 68 587
40% 36 68 620
30% 36 117 289
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 458
90% 36 68 481
70% 36 68 517
50% 36 68 578
40% 36 117 268
30% 38 315 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1646
95% 35 67 475
90% 35 67 499
70% 35 67 537
50% 35 115 243
40% 35 117 266
30% 35 117 286
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42415
95% 36 74 400
90% 36 74 424
70% 36 74 454
50% 36 74 501
40% 36 122 253
30% 36 122 271
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7746
95% 36 74 404
90% 36 74 428
70% 36 74 458
50% 36 74 504
40% 36 76 519
30% 36 77 517
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 407
90% 36 74 431
70% 36 74 460
50% 36 74 505
40% 36 122 256
30% 36 122 273
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1674
95% 3 21 2196
90% 36 68 488
70% 36 68 524
50% 51 95 298
40% 58 105 287
30% 58 107 306
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50083
95% 1 1 34865
90% 1 7 8025
70% 3 27 1659
50% 36 74 506
40% 36 78 500
30% 36 78 513
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 409
90% 36 74 433
70% 36 74 462
50% 36 74 508
40% 37 77 511
30% 37 78 514
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.