Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 823
95 % 36 68 652
90 % 36 68 679
70 % 36 68 722
50 % 36 175 200
40 % 36 175 220
30 % 44 509 30
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58425
95 % 1 1 40724
90 % 1 1 38770
70 % 36 68 714
50 % 36 171 205
40 % 36 171 229
30 % 36 171 235
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 413
95 % 36 74 576
90 % 36 74 606
70 % 36 74 637
50 % 36 74 685
40 % 36 74 724
30 % 43 491 36
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 411
95 % 36 74 574
90 % 36 74 604
70 % 36 74 634
50 % 36 76 659
40 % 36 76 700
30 % 36 79 670
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 463
95 % 36 68 653
90 % 36 68 681
70 % 36 68 724
50 % 36 70 746
40 % 36 70 784
30 % 36 70 779
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2151
95 % 36 68 651
90 % 36 68 677
70 % 36 68 720
50 % 36 68 773
40 % 36 72 751
30 % 36 72 747
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 465
95 % 36 68 656
90 % 36 68 683
70 % 36 68 728
50 % 36 70 748
40 % 36 70 786
30 % 36 71 761
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 478
95 % 36 68 649
90 % 36 68 675
70 % 36 68 717
50 % 36 68 770
40 % 36 68 806
30 % 36 174 228
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 419
95 % 36 74 581
90 % 36 74 610
70 % 36 74 643
50 % 36 76 662
40 % 36 78 677
30 % 43 399 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 579
90 % 36 74 609
70 % 36 74 642
50 % 36 179 194
40 % 36 179 212
30 % 36 179 224
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 444
95 % 34 70 627
90 % 34 70 654
70 % 34 70 697
50 % 34 70 749
40 % 34 70 789
30 % 34 70 783
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 582
90 % 36 74 611
70 % 36 74 644
50 % 36 74 690
40 % 36 74 727
30 % 36 74 725
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 461
95 % 36 68 650
90 % 36 68 676
70 % 36 68 718
50 % 36 68 771
40 % 36 70 781
30 % 36 71 758
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 658
90 % 36 68 685
70 % 36 68 730
50 % 36 68 777
40 % 36 68 811
30 % 36 68 804
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61743
95 % 3 5 13809
90 % 3 5 13556
70 % 3 5 12721
50 % 3 5 11366
40 % 3 5 10309
30 % 3 5 8948
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68007
95 % 1 1 47126
90 % 1 1 44816
70 % 3 21 2821
50 % 7 30 1890
40 % 7 128 296
30 % 26 151 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 468
95 % 36 68 659
90 % 36 68 686
70 % 36 68 733
50 % 36 69 758
40 % 36 69 799
30 % 36 69 795
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69405
95 % 36 68 660
90 % 36 68 687
70 % 36 68 734
50 % 36 172 202
40 % 36 172 227
30 % 36 172 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 466
95 % 36 68 657
90 % 36 68 684
70 % 36 68 729
50 % 36 68 776
40 % 36 68 810
30 % 36 168 241
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 460
95 % 36 68 648
90 % 36 68 674
70 % 36 68 716
50 % 36 68 769
40 % 36 173 223
30 % 44 500 32
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2135
95 % 36 68 646
90 % 36 68 672
70 % 36 68 713
50 % 36 170 204
40 % 36 172 226
30 % 36 172 231
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51719
95 % 36 74 565
90 % 36 74 596
70 % 36 74 629
50 % 36 74 679
40 % 36 179 210
30 % 36 179 221
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9738
95 % 36 74 569
90 % 36 74 601
70 % 36 74 633
50 % 36 74 681
40 % 36 76 698
30 % 37 78 679
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 412
95 % 36 74 575
90 % 36 74 605
70 % 36 74 635
50 % 36 74 683
40 % 37 179 211
30 % 37 179 223
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2161
95 % 3 21 2792
90 % 36 68 680
70 % 36 68 723
50 % 51 105 316
40 % 58 120 286
30 % 58 122 283
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60656
95 % 1 1 41965
90 % 1 7 9829
70 % 3 27 2100
50 % 36 74 684
40 % 36 79 666
30 % 36 79 673
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 414
95 % 36 74 577
90 % 36 74 607
70 % 36 74 640
50 % 36 74 689
40 % 37 77 691
30 % 37 78 682

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 18 P 50S ribosomal protein L19e 2238
2 1VQO 18 P 50S ribosomal protein L19E 2238
3 1VQ8 18 P 50S ribosomal protein L19E 2238
4 1S72 18 P 50S ribosomal protein L19E 2238
5 1JJ2 17 O RIBOSOMAL PROTEIN L19E 2238
6 1YHQ 18 P 50S ribosomal protein L19E 2238
7 1VQP 18 P 50S ribosomal protein L19E 2238
8 1VQM 18 P 50S ribosomal protein L19E 2238
9 3CC2 16 P 50S ribosomal protein L19e 2238
10 1VQL 18 P 50S ribosomal protein L19E 2238
11 1VQK 18 P 50S ribosomal protein L19E 2238
12 1VQN 19 P 50S ribosomal protein L19E 2238
13 1YIJ 18 P 50S ribosomal protein L19E 2238
14 1YI2 18 P 50S ribosomal protein L19E 2238
15 1VQ9 18 P 50S ribosomal protein L19E 2238
16 1VQ7 18 P 50S ribosomal protein L19E 2238
17 3CCM 16 P 50S ribosomal protein L19e 2238
18 1VQ5 18 P 50S ribosomal protein L19E 2238
19 3CCJ 16 P 50S ribosomal protein L19e 2238
20 3CC7 16 P 50S ribosomal protein L19e 2238
21 1YIT 22 P 50S RIBOSOMAL PROTEIN L19E 2238
22 3CCE 16 P 50S ribosomal protein L19e 2238
23 3G6E 17 P 50S ribosomal protein L19e 2238
24 3CPW 17 O 50S ribosomal protein L19e 2238
25 3CCU 16 P 50S ribosomal protein L19e 2238
26 1VQ6 19 P 50S ribosomal protein L19E 2238
27 1M90 18 Q RIBOSOMAL PROTEIN L19E 2238
28 3CCL 16 P 50S ribosomal protein L19e 2238
29 1YJW 22 P 50S RIBOSOMAL PROTEIN L19E 2238
30 1YJ9 18 P 50S ribosomal protein L19E 2238
31 3CD6 16 P 50S ribosomal protein L19e 2238
32 3CCV 16 P 50S ribosomal protein L19e 2238
33 3CC4 16 P 50S ribosomal protein L19e 2238
34 2OTL 17 P 50S ribosomal protein L19e 2238
35 3G71 17 P 50S ribosomal protein L19e 2238
36 1FFK 15 M RIBOSOMAL PROTEIN L19 2238
37 1VQ4 18 P 50S ribosomal protein L19E 2238
38 1YJN 18 P 50S ribosomal protein L19E 2238
39 3CMA 16 P 50S ribosomal protein L19e 2238
40 3CCS 16 P 50S ribosomal protein L19e 2238
41 3CCQ 16 P 50S ribosomal protein L19e 2238
42 3I56 16 P 50S ribosomal protein L19e 2238
43 3CCR 16 P 50S ribosomal protein L19e 2238
44 2OTJ 17 P 50S ribosomal protein L19e 2238
45 1KQS 19 O RIBOSOMAL PROTEIN L19E 2238
46 3OW2 17 O 50S ribosomal protein L19e 2238
47 3CXC 18 O RIBOSOMAL PROTEIN L19E 2238
48 1QVG 18 O 50S ribosomal protein L19E 2238
49 3CME 16 P 50S ribosomal protein L19e 2238
50 2QEX 17 P 50S ribosomal protein L19e 2238
51 1KC8 17 Q RIBOSOMAL PROTEIN L19E 2238
52 1N8R 17 Q 50S ribosomal protein L19E 2238
53 1Q81 18 Q 50S ribosomal protein L19E 2238
54 1Q82 18 Q 50S ribosomal protein L19E 2238
55 1QVF 18 O 50S ribosomal protein L19E 2238
56 1NJI 17 Q 50S ribosomal protein L19E 2238
57 1K73 17 Q RIBOSOMAL PROTEIN L19E 2238
58 1K9M 17 Q RIBOSOMAL PROTEIN L19E 2238
59 1KD1 17 Q RIBOSOMAL PROTEIN L19E 2238
60 3I55 17 P 50S ribosomal protein L19e 2238
61 1K8A 17 Q RIBOSOMAL PROTEIN L19E 2238
62 1Q86 18 Q 50S ribosomal protein L19E 2238
63 1M1K 17 Q RIBOSOMAL PROTEIN L19E 2238
64 3G4S 17 P 50S ribosomal protein L19e 2238
65 1W2B 20 O 50S RIBOSOMAL PROTEIN L19E 2238
66 2QA4 18 P 50S ribosomal protein L19e 2238
67 1Q7Y 18 Q 50S ribosomal protein L19E 2238
68 5T5H 17 T Ribosomal protein L19-like protein 5693
69 4V4N 4 AQ 50S ribosomal protein L19E SEE REMARK 999 2190
70 4V6U 49 BQ 50S ribosomal protein L19e 2261
71 4ADX 26 P RPL19E 145262
72 4V4B 35 BP 60S ribosomal protein L19 4932