Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 868
95 % 35 68 699 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 729
70 % 35 68 783
50 % 35 180 201
40 % 43 543 20
30 % 43 543 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61318
95 % 1 1 42800
90 % 1 1 40671
70 % 35 68 774
50 % 35 176 205
40 % 35 176 229
30 % 35 176 242
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 446
95 % 35 74 620 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 648
70 % 35 74 691
50 % 35 74 743
40 % 35 74 779
30 % 42 523 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 444
95 % 35 74 618 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 646
70 % 35 74 688
50 % 35 76 718
40 % 35 76 754
30 % 35 79 718
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 515
95 % 35 68 701 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 732
70 % 35 68 786
50 % 35 70 795
40 % 35 70 831
30 % 35 70 818
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2272
95 % 35 68 698 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 728
70 % 35 68 781
50 % 35 68 827
40 % 35 72 806
30 % 35 72 797
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 516
95 % 35 68 703 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 734
70 % 35 68 788
50 % 35 70 796
40 % 35 70 832
30 % 35 71 807
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 525
95 % 35 68 696 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 726
70 % 35 68 778
50 % 35 68 824
40 % 35 68 859
30 % 35 179 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 624 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 652
70 % 35 74 698
50 % 35 76 723
40 % 35 78 735
30 % 42 426 59
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 450
95 % 35 74 623 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 651
70 % 35 74 696
50 % 35 183 199
40 % 35 184 218
30 % 35 184 228
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 483
95 % 33 70 670 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 696
70 % 33 70 749
50 % 33 70 797
40 % 33 70 833
30 % 33 70 820
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 452
95 % 35 74 625 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 653
70 % 35 74 699
50 % 35 74 748
40 % 42 387 52
30 % 42 413 64
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 512
95 % 35 68 697 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 727
70 % 35 68 779
50 % 35 68 825
40 % 35 70 829
30 % 35 71 805
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 518
95 % 35 68 705 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 736
70 % 35 68 790
50 % 35 68 832
40 % 35 68 863
30 % 35 68 848
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64785
95 % 3 5 14578 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 5 14307
70 % 3 5 13437
50 % 3 5 11937
40 % 3 5 10828
30 % 3 5 9394
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71262
95 % 1 1 49463
90 % 1 1 46953
70 % 3 21 2971
50 % 7 30 1982
40 % 7 134 287
30 % 26 157 264
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 519
95 % 35 68 706 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 737
70 % 35 68 791
50 % 35 69 811
40 % 35 69 845
30 % 35 69 835
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72712
95 % 35 68 707 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 738
70 % 35 68 792
50 % 35 177 203
40 % 35 177 226
30 % 35 177 237
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 517
95 % 35 68 704 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 735
70 % 35 68 789
50 % 35 68 831
40 % 35 68 862
30 % 35 173 245
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 511
95 % 35 68 695 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 724
70 % 35 68 776
50 % 35 68 823
40 % 35 178 222
30 % 43 534 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2255
95 % 35 68 692 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 721
70 % 35 68 772
50 % 35 175 204
40 % 35 177 225
30 % 35 177 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54363
95 % 35 74 610 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 35 74 640
70 % 35 74 684
50 % 35 74 736
40 % 35 184 216
30 % 35 184 226
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10290
95 % 35 74 614 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 644
70 % 35 74 686
50 % 35 74 738
40 % 35 76 752
30 % 36 78 728
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 445
95 % 35 74 619 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 647
70 % 35 74 689
50 % 35 74 741
40 % 36 184 217
30 % 36 184 227
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2284
95 % 3 21 2936 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 731
70 % 35 68 785
50 % 50 105 350
40 % 57 126 282
30 % 57 128 283
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63641
95 % 1 1 44102
90 % 1 7 10407
70 % 3 27 2216
50 % 35 74 742
40 % 35 79 723
30 % 35 79 720
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 448
95 % 35 74 621 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 649
70 % 35 74 694
50 % 35 74 747
40 % 36 77 746
30 % 36 78 732

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1JJ2 17 O RIBOSOMAL PROTEIN L19E 2238
2 1M90 18 Q RIBOSOMAL PROTEIN L19E 2238
3 1FFK 15 M RIBOSOMAL PROTEIN L19 2238
4 1KQS 19 O RIBOSOMAL PROTEIN L19E 2238
5 3OW2 17 O 50S ribosomal protein L19e 2238
6 3CXC 18 O RIBOSOMAL PROTEIN L19E 2238
7 1QVG 18 O 50S ribosomal protein L19E 2238
8 1KC8 17 Q RIBOSOMAL PROTEIN L19E 2238
9 1N8R 17 Q 50S ribosomal protein L19E 2238
10 1Q81 18 Q 50S ribosomal protein L19E 2238
11 1Q82 18 Q 50S ribosomal protein L19E 2238
12 1QVF 18 O 50S ribosomal protein L19E 2238
13 1NJI 17 Q 50S ribosomal protein L19E 2238
14 1K73 17 Q RIBOSOMAL PROTEIN L19E 2238
15 1K9M 17 Q RIBOSOMAL PROTEIN L19E 2238
16 1KD1 17 Q RIBOSOMAL PROTEIN L19E 2238
17 1K8A 17 Q RIBOSOMAL PROTEIN L19E 2238
18 1Q86 18 Q 50S ribosomal protein L19E 2238
19 1M1K 17 Q RIBOSOMAL PROTEIN L19E 2238
20 1W2B 20 O 50S RIBOSOMAL PROTEIN L19E 2238
21 1Q7Y 18 Q 50S ribosomal protein L19E 2238