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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 519 Members. Sequence cutoff: 70% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4HUB 17 O 50S ribosomal protein L18e 272569  
2 1VQO 17 O 50S ribosomal protein L18e 2238  
3 1VQ8 17 O 50S ribosomal protein L18e 2238  
4 1S72 17 O 50S ribosomal protein L18e 2238  
5 1JJ2 16 N RIBOSOMAL PROTEIN L18E 2238  
6 1YHQ 17 O 50S ribosomal protein L18e 2238  
7 1VQP 17 O 50S ribosomal protein L18e 2238  
8 1VQM 17 O 50S ribosomal protein L18e 2238  
9 3CC2 15 O 50S ribosomal protein L18e 2238  
10 1VQL 17 O 50S ribosomal protein L18e 2238  
11 1VQK 17 O 50S ribosomal protein L18e 2238  
12 1VQN 18 O 50S ribosomal protein L18e 2238  
13 1YIJ 17 O 50S ribosomal protein L18e 2238  
14 1YI2 17 O 50S ribosomal protein L18e 2238  
15 1VQ9 17 O 50S ribosomal protein L18e 2238  
16 1VQ7 17 O 50S ribosomal protein L18e 2238  
17 3CCM 15 O 50S ribosomal protein L18e 2238  
18 1VQ5 17 O 50S ribosomal protein L18e 2238  
19 3CCJ 15 O 50S ribosomal protein L18e 2238  
20 3CC7 15 O 50S ribosomal protein L18e 2238  
21 1YIT 21 O 50S RIBOSOMAL PROTEIN L18E 2238  
22 3CCE 15 O 50S ribosomal protein L18e 2238  
23 3G6E 16 O 50S ribosomal protein L18e 2238  
24 3CPW 16 N 50S ribosomal protein L18e 2238  
25 3CCU 15 O 50S ribosomal protein L18e 2238  
26 1VQ6 18 O 50S ribosomal protein L18e 2238  
27 1M90 17 P RIBOSOMAL PROTEIN L18E 2238  
28 3CCL 15 O 50S ribosomal protein L18e 2238  
29 1YJW 21 O 50S RIBOSOMAL PROTEIN L18E 2238  
30 1YJ9 17 O 50S ribosomal protein L18e 2238  
31 3CD6 15 O 50S ribosomal protein L18e 2238  
32 3CCV 15 O 50S ribosomal protein L18e 2238  
33 3CC4 15 O 50S ribosomal protein L18e 2238  
34 2OTL 16 O 50S ribosomal protein L18e 2238  
35 3G71 16 O 50S ribosomal protein L18e 2238  
36 1FFK 14 L RIBOSOMAL PROTEIN L18E 2238  
37 1VQ4 17 O 50S ribosomal protein L18e 2238  
38 1YJN 17 O 50S ribosomal protein L18e 2238  
39 3CMA 15 O 50S ribosomal protein L18e 2238  
40 3CCS 15 O 50S ribosomal protein L18e 2238  
41 3CCQ 15 O 50S ribosomal protein L18e 2238  
42 3I56 15 O 50S ribosomal protein L18e 2238  
43 3CCR 15 O 50S ribosomal protein L18e 2238  
44 2OTJ 16 O 50S ribosomal protein L18e 2238  
45 1KQS 18 N RIBOSOMAL PROTEIN L18E 2238  
46 3OW2 16 N 50S ribosomal protein L18e 2238  
47 3CXC 17 N RIBOSOMAL PROTEIN L18E 2238  
48 1QVG 17 N 50S ribosomal protein L18e 2238  
49 3CME 15 O 50S ribosomal protein L18e 2238  
50 2QEX 16 O 50S ribosomal protein L18e 2238  
51 1KC8 16 P RIBOSOMAL PROTEIN L18E 2238  
52 1N8R 16 P 50S ribosomal protein L18E 2238  
53 1Q81 17 P 50S ribosomal protein L18e 2238  
54 1Q82 17 P 50S ribosomal protein L18e 2238  
55 1QVF 17 N 50S ribosomal protein L18e 2238  
56 1NJI 16 P 50S ribosomal protein L18E 2238  
57 1K73 16 P RIBOSOMAL PROTEIN L18E 2238  
58 1K9M 16 P RIBOSOMAL PROTEIN L18E 2238  
59 1KD1 16 P RIBOSOMAL PROTEIN L18E 2238  
60 3I55 16 O 50S ribosomal protein L18e 2238  
61 1K8A 16 P RIBOSOMAL PROTEIN L18E 2238  
62 1Q86 17 P 50S ribosomal protein L18e 2238  
63 1M1K 16 P RIBOSOMAL PROTEIN L18E 2238  
64 3G4S 16 O 50S ribosomal protein L18e 2238  
65 1W2B 19 N 50S RIBOSOMAL PROTEIN L18E 2238  
66 2QA4 17 O 50S ribosomal protein L18e 2238  
67 1Q7Y 17 P 50S ribosomal protein L18e 2238  
68 4ADX 25 O RPL18E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 618
95% 36 68 457
90% 36 68 481
70% 36 68 516
50% 36 139 234
40% 36 139 262
30% 39 454 46
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47485
95% 1 1 33347
90% 1 1 31889
70% 36 68 509
50% 36 137 238
40% 36 137 272
30% 36 137 292
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 401
90% 36 74 426
70% 36 74 453
50% 36 74 498
40% 36 74 535
30% 38 446 54
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 281
95% 36 74 399
90% 36 74 424
70% 36 74 451
50% 36 76 480
40% 36 76 514
30% 36 78 506
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 459
90% 36 68 484
70% 36 68 519
50% 36 70 544
40% 36 70 578
30% 36 70 578
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1639
95% 36 68 455
90% 36 68 479
70% 36 68 514
50% 36 68 573
40% 36 70 577
30% 36 71 559
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 461
90% 36 68 486
70% 36 68 521
50% 36 70 546
40% 36 70 581
30% 36 71 562
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 332
95% 36 68 452
90% 36 68 477
70% 36 68 512
50% 36 68 570
40% 36 68 609
30% 36 140 277
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 404
90% 36 74 429
70% 36 74 457
50% 36 76 482
40% 36 78 496
30% 38 387 69
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 403
90% 36 74 428
70% 36 74 456
50% 36 146 216
40% 36 146 245
30% 36 146 263
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 307
95% 34 70 438
90% 34 70 460
70% 34 70 494
50% 34 70 548
40% 34 70 583
30% 34 70 580
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 405
90% 36 74 430
70% 36 74 458
50% 36 74 502
40% 36 74 538
30% 36 74 539
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 317
95% 36 68 453
90% 36 68 478
70% 36 68 513
50% 36 68 571
40% 36 70 576
30% 36 71 558
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 463
90% 36 68 488
70% 36 68 523
50% 36 68 578
40% 36 68 616
30% 36 68 608
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50422
95% 3 5 11154
90% 3 5 10976
70% 3 5 10377
50% 3 5 9327
40% 3 5 8508
30% 3 5 7467
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 55987
95% 1 1 39084
90% 1 1 37384
70% 3 21 2220
50% 7 30 1506
40% 7 92 409
30% 26 115 333
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 465
90% 36 68 490
70% 36 68 525
50% 36 69 561
40% 36 69 601
30% 36 69 597
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57255
95% 36 68 466
90% 36 68 491
70% 36 68 526
50% 36 139 236
40% 36 139 264
30% 36 139 280
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 323
95% 36 68 462
90% 36 68 487
70% 36 68 522
50% 36 68 577
40% 36 68 615
30% 36 138 287
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 451
90% 36 68 476
70% 36 68 511
50% 36 68 568
40% 36 138 266
30% 39 449 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1622
95% 35 67 469
90% 35 67 494
70% 35 67 532
50% 35 136 242
40% 35 138 265
30% 35 138 285
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41857
95% 36 74 394
90% 36 74 420
70% 36 74 448
50% 36 74 493
40% 36 143 251
30% 36 143 266
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7640
95% 36 74 397
90% 36 74 422
70% 36 74 450
50% 36 74 495
40% 36 76 513
30% 36 77 512
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 400
90% 36 74 425
70% 36 74 452
50% 36 74 496
40% 36 143 252
30% 36 143 268
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1649
95% 3 21 2163
90% 36 68 483
70% 36 68 518
50% 51 97 296
40% 57 106 285
30% 57 108 303
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49449
95% 1 1 34448
90% 1 7 7931
70% 3 27 1636
50% 36 74 497
40% 36 78 493
30% 36 78 508
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 402
90% 36 74 427
70% 36 74 454
50% 36 74 499
40% 37 77 504
30% 37 78 509
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.