Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 799
95 % 36 68 632
90 % 36 68 659
70 % 36 68 700
50 % 36 168 203
40 % 36 168 224
30 % 44 495 30
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57535
95 % 1 1 40079
90 % 1 1 38166
70 % 36 68 691
50 % 36 164 212
40 % 36 164 234
30 % 36 164 239
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 391
95 % 36 74 551
90 % 36 74 584
70 % 36 74 617
50 % 36 74 666
40 % 36 74 708
30 % 43 481 35
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 389
95 % 36 74 549
90 % 36 74 582
70 % 36 74 614
50 % 36 76 645
40 % 36 76 689
30 % 36 79 663
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 448
95 % 36 68 633
90 % 36 68 661
70 % 36 68 702
50 % 36 70 720
40 % 36 70 760
30 % 36 70 760
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2115
95 % 36 68 631
90 % 36 68 657
70 % 36 68 698
50 % 36 68 750
40 % 36 72 729
30 % 36 72 727
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 450
95 % 36 68 636
90 % 36 68 663
70 % 36 68 707
50 % 36 70 721
40 % 36 70 761
30 % 36 71 742
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 458
95 % 36 68 628
90 % 36 68 654
70 % 36 68 694
50 % 36 68 747
40 % 36 68 780
30 % 36 167 234
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 398
95 % 36 74 558
90 % 36 74 589
70 % 36 74 623
50 % 36 76 647
40 % 36 78 666
30 % 43 396 56
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 397
95 % 36 74 557
90 % 36 74 588
70 % 36 74 622
50 % 36 172 198
40 % 36 172 219
30 % 36 172 227
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 430
95 % 34 70 609
90 % 34 70 636
70 % 34 70 670
50 % 34 70 722
40 % 34 70 763
30 % 34 70 762
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 399
95 % 36 74 559
90 % 36 74 590
70 % 36 74 624
50 % 36 74 671
40 % 36 74 712
30 % 36 74 711
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 446
95 % 36 68 630
90 % 36 68 656
70 % 36 68 696
50 % 36 68 748
40 % 36 70 757
30 % 36 71 740
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 452
95 % 36 68 638
90 % 36 68 665
70 % 36 68 709
50 % 36 68 754
40 % 36 68 784
30 % 36 68 785
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60821
95 % 3 5 13606
90 % 3 5 13361
70 % 3 5 12538
50 % 3 5 11209
40 % 3 5 10174
30 % 3 5 8829
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67053
95 % 1 1 46457
90 % 1 1 44199
70 % 3 21 2783
50 % 7 30 1856
40 % 7 121 306
30 % 26 144 268
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 453
95 % 36 68 639
90 % 36 68 666
70 % 36 68 711
50 % 36 69 733
40 % 36 69 774
30 % 36 69 776
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68440
95 % 36 68 640
90 % 36 68 667
70 % 36 68 712
50 % 36 165 205
40 % 36 165 229
30 % 36 165 236
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 451
95 % 36 68 637
90 % 36 68 664
70 % 36 68 708
50 % 36 68 753
40 % 36 68 783
30 % 36 161 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 444
95 % 36 68 627
90 % 36 68 653
70 % 36 68 693
50 % 36 68 746
40 % 36 166 227
30 % 44 486 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2095
95 % 36 68 624
90 % 36 68 651
70 % 36 68 690
50 % 36 163 211
40 % 36 165 228
30 % 36 165 235
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50907
95 % 36 74 543
90 % 36 74 578
70 % 36 74 609
50 % 36 74 659
40 % 36 172 217
30 % 36 172 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9604
95 % 36 74 545
90 % 36 74 580
70 % 36 74 613
50 % 36 74 662
40 % 36 76 687
30 % 36 77 681
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 390
95 % 36 74 550
90 % 36 74 583
70 % 36 74 615
50 % 36 74 664
40 % 37 172 218
30 % 37 172 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2125
95 % 3 21 2752
90 % 36 68 660
70 % 36 68 701
50 % 51 105 307
40 % 58 120 278
30 % 58 122 277
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59753
95 % 1 1 41317
90 % 1 7 9702
70 % 3 27 2056
50 % 36 74 665
40 % 36 79 654
30 % 36 79 666
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 392
95 % 36 74 552
90 % 36 74 585
70 % 36 74 620
50 % 36 74 669
40 % 37 77 679
30 % 37 78 673

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 17 O 50S ribosomal protein L18e 2238
2 1VQO 17 O 50S ribosomal protein L18e 2238
3 1VQ8 17 O 50S ribosomal protein L18e 2238
4 1S72 17 O 50S ribosomal protein L18e 2238
5 1JJ2 16 N RIBOSOMAL PROTEIN L18E 2238
6 1YHQ 17 O 50S ribosomal protein L18e 2238
7 1VQP 17 O 50S ribosomal protein L18e 2238
8 1VQM 17 O 50S ribosomal protein L18e 2238
9 3CC2 15 O 50S ribosomal protein L18e 2238
10 1VQL 17 O 50S ribosomal protein L18e 2238
11 1VQK 17 O 50S ribosomal protein L18e 2238
12 1VQN 18 O 50S ribosomal protein L18e 2238
13 1YIJ 17 O 50S ribosomal protein L18e 2238
14 1YI2 17 O 50S ribosomal protein L18e 2238
15 1VQ9 17 O 50S ribosomal protein L18e 2238
16 1VQ7 17 O 50S ribosomal protein L18e 2238
17 3CCM 15 O 50S ribosomal protein L18e 2238
18 1VQ5 17 O 50S ribosomal protein L18e 2238
19 3CCJ 15 O 50S ribosomal protein L18e 2238
20 3CC7 15 O 50S ribosomal protein L18e 2238
21 1YIT 21 O 50S RIBOSOMAL PROTEIN L18E 2238
22 3CCE 15 O 50S ribosomal protein L18e 2238
23 3G6E 16 O 50S ribosomal protein L18e 2238
24 3CPW 16 N 50S ribosomal protein L18e 2238
25 3CCU 15 O 50S ribosomal protein L18e 2238
26 1VQ6 18 O 50S ribosomal protein L18e 2238
27 1M90 17 P RIBOSOMAL PROTEIN L18E 2238
28 3CCL 15 O 50S ribosomal protein L18e 2238
29 1YJW 21 O 50S RIBOSOMAL PROTEIN L18E 2238
30 1YJ9 17 O 50S ribosomal protein L18e 2238
31 3CD6 15 O 50S ribosomal protein L18e 2238
32 3CCV 15 O 50S ribosomal protein L18e 2238
33 3CC4 15 O 50S ribosomal protein L18e 2238
34 2OTL 16 O 50S ribosomal protein L18e 2238
35 3G71 16 O 50S ribosomal protein L18e 2238
36 1FFK 14 L RIBOSOMAL PROTEIN L18E 2238
37 1VQ4 17 O 50S ribosomal protein L18e 2238
38 1YJN 17 O 50S ribosomal protein L18e 2238
39 3CMA 15 O 50S ribosomal protein L18e 2238
40 3CCS 15 O 50S ribosomal protein L18e 2238
41 3CCQ 15 O 50S ribosomal protein L18e 2238
42 3I56 15 O 50S ribosomal protein L18e 2238
43 3CCR 15 O 50S ribosomal protein L18e 2238
44 2OTJ 16 O 50S ribosomal protein L18e 2238
45 1KQS 18 N RIBOSOMAL PROTEIN L18E 2238
46 3OW2 16 N 50S ribosomal protein L18e 2238
47 3CXC 17 N RIBOSOMAL PROTEIN L18E 2238
48 1QVG 17 N 50S ribosomal protein L18e 2238
49 3CME 15 O 50S ribosomal protein L18e 2238
50 2QEX 16 O 50S ribosomal protein L18e 2238
51 1KC8 16 P RIBOSOMAL PROTEIN L18E 2238
52 1N8R 16 P 50S ribosomal protein L18E 2238
53 1Q81 17 P 50S ribosomal protein L18e 2238
54 1Q82 17 P 50S ribosomal protein L18e 2238
55 1QVF 17 N 50S ribosomal protein L18e 2238
56 1NJI 16 P 50S ribosomal protein L18E 2238
57 1K73 16 P RIBOSOMAL PROTEIN L18E 2238
58 1K9M 16 P RIBOSOMAL PROTEIN L18E 2238
59 1KD1 16 P RIBOSOMAL PROTEIN L18E 2238
60 3I55 16 O 50S ribosomal protein L18e 2238
61 1K8A 16 P RIBOSOMAL PROTEIN L18E 2238
62 1Q86 17 P 50S ribosomal protein L18e 2238
63 1M1K 16 P RIBOSOMAL PROTEIN L18E 2238
64 3G4S 16 O 50S ribosomal protein L18e 2238
65 1W2B 19 N 50S RIBOSOMAL PROTEIN L18E 2238
66 2QA4 17 O 50S ribosomal protein L18e 2238
67 1Q7Y 17 P 50S ribosomal protein L18e 2238
68 4V4N 63 AP 50S ribosomal protein L18E SEE REMARK 999 2190
69 4V6U 58 BP 50S ribosomal protein L18e 2261
70 4ADX 25 O RPL18E 145262