Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 755
95 % 36 68 537
90 % 36 68 565
70 % 36 68 616
50 % 36 145 221
40 % 36 145 247
30 % 44 442 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55176
95 % 1 1 38507
90 % 1 1 36690
70 % 36 68 610
50 % 36 140 232
40 % 36 140 260
30 % 36 140 270
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 74 631
40 % 36 74 676
30 % 43 431 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 468
90 % 36 74 496
70 % 36 74 540
50 % 36 76 609
40 % 36 76 652
30 % 36 78 637
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 538
90 % 36 68 567
70 % 36 68 618
50 % 36 70 679
40 % 36 70 724
30 % 36 70 729
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1967
95 % 36 68 536
90 % 36 68 564
70 % 36 68 615
50 % 36 68 706
40 % 36 70 721
30 % 36 71 711
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 540
90 % 36 68 570
70 % 36 68 621
50 % 36 70 681
40 % 36 70 726
30 % 36 71 715
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 372
95 % 36 68 534
90 % 36 68 562
70 % 36 68 613
50 % 36 68 703
40 % 36 68 743
30 % 36 144 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 476
90 % 36 74 505
70 % 36 74 551
50 % 36 76 611
40 % 36 78 628
30 % 43 369 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 474
90 % 36 74 503
70 % 36 74 549
50 % 36 149 215
40 % 36 149 240
30 % 36 149 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 346
95 % 34 70 515
90 % 34 70 542
70 % 34 70 591
50 % 34 70 682
40 % 34 70 727
30 % 34 70 730
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 477
90 % 36 74 506
70 % 36 74 552
50 % 36 74 637
40 % 36 74 681
30 % 36 74 679
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 535
90 % 36 68 563
70 % 36 68 614
50 % 36 68 704
40 % 36 70 720
30 % 36 71 710
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 365
95 % 36 68 542
90 % 36 68 572
70 % 36 68 623
50 % 36 68 709
40 % 36 68 748
30 % 36 68 751
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58375
95 % 3 5 13020
90 % 3 5 12780
70 % 3 5 12026
50 % 3 5 10766
40 % 3 5 9805
30 % 3 5 8536
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64443
95 % 1 1 44713
90 % 1 1 42589
70 % 3 21 2619
50 % 7 30 1757
40 % 7 98 363
30 % 26 121 316
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 366
95 % 36 68 543
90 % 36 68 573
70 % 36 68 624
50 % 36 69 694
40 % 36 69 737
30 % 36 69 743
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65795
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 142 226
40 % 36 142 256
30 % 36 142 263
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 541
90 % 36 68 571
70 % 36 68 622
50 % 36 68 708
40 % 36 68 747
30 % 36 139 272
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 533
90 % 36 68 561
70 % 36 68 612
50 % 36 68 702
40 % 36 144 248
30 % 44 437 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1945
95 % 36 68 531
90 % 36 68 559
70 % 36 68 609
50 % 36 140 231
40 % 36 142 255
30 % 36 142 261
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48790
95 % 36 74 461
90 % 36 74 490
70 % 36 74 536
50 % 36 74 622
40 % 36 149 235
30 % 36 149 247
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9103
95 % 36 74 464
90 % 36 74 493
70 % 36 74 539
50 % 36 74 625
40 % 36 76 651
30 % 36 77 644
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 470
90 % 36 74 498
70 % 36 74 542
50 % 36 74 629
40 % 37 150 233
30 % 37 150 246
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1976
95 % 3 21 2573
90 % 36 68 566
70 % 36 68 617
50 % 51 98 342
40 % 58 112 311
30 % 58 114 321
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57335
95 % 1 1 39714
90 % 1 7 9264
70 % 3 27 1918
50 % 36 74 630
40 % 36 79 616
30 % 36 79 626
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 472
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 37 77 640
30 % 37 78 640

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 17 O 50S ribosomal protein L18e 2238
2 1VQO 17 O 50S ribosomal protein L18e 2238
3 1VQ8 17 O 50S ribosomal protein L18e 2238
4 1S72 17 O 50S ribosomal protein L18e 2238
5 1JJ2 16 N RIBOSOMAL PROTEIN L18E 2238
6 1YHQ 17 O 50S ribosomal protein L18e 2238
7 1VQP 17 O 50S ribosomal protein L18e 2238
8 1VQM 17 O 50S ribosomal protein L18e 2238
9 3CC2 15 O 50S ribosomal protein L18e 2238
10 1VQL 17 O 50S ribosomal protein L18e 2238
11 1VQK 17 O 50S ribosomal protein L18e 2238
12 1VQN 18 O 50S ribosomal protein L18e 2238
13 1YIJ 17 O 50S ribosomal protein L18e 2238
14 1YI2 17 O 50S ribosomal protein L18e 2238
15 1VQ9 17 O 50S ribosomal protein L18e 2238
16 1VQ7 17 O 50S ribosomal protein L18e 2238
17 3CCM 15 O 50S ribosomal protein L18e 2238
18 1VQ5 17 O 50S ribosomal protein L18e 2238
19 3CCJ 15 O 50S ribosomal protein L18e 2238
20 3CC7 15 O 50S ribosomal protein L18e 2238
21 1YIT 21 O 50S RIBOSOMAL PROTEIN L18E 2238
22 3CCE 15 O 50S ribosomal protein L18e 2238
23 3G6E 16 O 50S ribosomal protein L18e 2238
24 3CPW 16 N 50S ribosomal protein L18e 2238
25 3CCU 15 O 50S ribosomal protein L18e 2238
26 1VQ6 18 O 50S ribosomal protein L18e 2238
27 1M90 17 P RIBOSOMAL PROTEIN L18E 2238
28 3CCL 15 O 50S ribosomal protein L18e 2238
29 1YJW 21 O 50S RIBOSOMAL PROTEIN L18E 2238
30 1YJ9 17 O 50S ribosomal protein L18e 2238
31 3CD6 15 O 50S ribosomal protein L18e 2238
32 3CCV 15 O 50S ribosomal protein L18e 2238
33 3CC4 15 O 50S ribosomal protein L18e 2238
34 2OTL 16 O 50S ribosomal protein L18e 2238
35 3G71 16 O 50S ribosomal protein L18e 2238
36 1FFK 14 L RIBOSOMAL PROTEIN L18E 2238
37 1VQ4 17 O 50S ribosomal protein L18e 2238
38 1YJN 17 O 50S ribosomal protein L18e 2238
39 3CMA 15 O 50S ribosomal protein L18e 2238
40 3CCS 15 O 50S ribosomal protein L18e 2238
41 3CCQ 15 O 50S ribosomal protein L18e 2238
42 3I56 15 O 50S ribosomal protein L18e 2238
43 3CCR 15 O 50S ribosomal protein L18e 2238
44 2OTJ 16 O 50S ribosomal protein L18e 2238
45 1KQS 18 N RIBOSOMAL PROTEIN L18E 2238
46 3OW2 16 N 50S ribosomal protein L18e 2238
47 3CXC 17 N RIBOSOMAL PROTEIN L18E 2238
48 1QVG 17 N 50S ribosomal protein L18e 2238
49 3CME 15 O 50S ribosomal protein L18e 2238
50 2QEX 16 O 50S ribosomal protein L18e 2238
51 1KC8 16 P RIBOSOMAL PROTEIN L18E 2238
52 1N8R 16 P 50S ribosomal protein L18E 2238
53 1Q81 17 P 50S ribosomal protein L18e 2238
54 1Q82 17 P 50S ribosomal protein L18e 2238
55 1QVF 17 N 50S ribosomal protein L18e 2238
56 1NJI 16 P 50S ribosomal protein L18E 2238
57 1K73 16 P RIBOSOMAL PROTEIN L18E 2238
58 1K9M 16 P RIBOSOMAL PROTEIN L18E 2238
59 1KD1 16 P RIBOSOMAL PROTEIN L18E 2238
60 3I55 16 O 50S ribosomal protein L18e 2238
61 1K8A 16 P RIBOSOMAL PROTEIN L18E 2238
62 1Q86 17 P 50S ribosomal protein L18e 2238
63 1M1K 16 P RIBOSOMAL PROTEIN L18E 2238
64 3G4S 16 O 50S ribosomal protein L18e 2238
65 1W2B 19 N 50S RIBOSOMAL PROTEIN L18E 2238
66 2QA4 17 O 50S ribosomal protein L18e 2238
67 1Q7Y 17 P 50S ribosomal protein L18e 2238
68 4V4N 63 AP 50S ribosomal protein L18E SEE REMARK 999 2190
69 4V6U 58 BP 50S ribosomal protein L18e 2261
70 4ADX 25 O RPL18E 145262