Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 734
95 % 36 68 522
90 % 36 68 551
70 % 36 68 605
50 % 36 138 233
40 % 36 138 258
30 % 43 418 37
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54054
95 % 1 1 37756
90 % 1 1 35988
70 % 36 68 599
50 % 36 133 243
40 % 36 133 269
30 % 36 133 283
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 458
90 % 36 74 484
70 % 36 74 527
50 % 36 74 603
40 % 36 74 653
30 % 42 407 43
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 456
90 % 36 74 482
70 % 36 74 524
50 % 36 76 579
40 % 36 76 627
30 % 36 78 601
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 525
90 % 36 68 555
70 % 36 68 608
50 % 36 70 662
40 % 36 70 707
30 % 36 70 708
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1908
95 % 36 68 521
90 % 36 68 550
70 % 36 68 604
50 % 36 68 696
40 % 36 70 704
30 % 36 71 690
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 526
90 % 36 68 556
70 % 36 68 609
50 % 36 70 664
40 % 36 70 709
30 % 36 71 693
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 364
95 % 36 68 519
90 % 36 68 548
70 % 36 68 602
50 % 36 68 693
40 % 36 68 726
30 % 36 137 271
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 464
90 % 36 74 490
70 % 36 74 535
50 % 36 76 581
40 % 36 78 599
30 % 42 352 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 462
90 % 36 74 488
70 % 36 74 533
50 % 36 142 222
40 % 36 142 253
30 % 36 142 264
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 340
95 % 34 70 503
90 % 34 70 529
70 % 34 70 580
50 % 34 70 665
40 % 34 70 710
30 % 34 70 710
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 465
90 % 36 74 491
70 % 36 74 536
50 % 36 74 611
40 % 36 74 661
30 % 36 74 654
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 520
90 % 36 68 549
70 % 36 68 603
50 % 36 68 694
40 % 36 70 703
30 % 36 71 689
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 528
90 % 36 68 558
70 % 36 68 611
50 % 36 68 699
40 % 36 68 729
30 % 36 68 730
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57181
95 % 3 5 12705
90 % 3 5 12466
70 % 3 5 11738
50 % 3 5 10524
40 % 3 5 9603
30 % 3 5 8365
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63147
95 % 1 1 43834
90 % 1 1 41793
70 % 3 21 2555
50 % 7 30 1717
40 % 7 91 391
30 % 26 114 330
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 530
90 % 36 68 560
70 % 36 68 613
50 % 36 69 682
40 % 36 69 721
30 % 36 69 724
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64488
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 135 236
40 % 36 135 263
30 % 36 135 276
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 527
90 % 36 68 557
70 % 36 68 610
50 % 36 68 698
40 % 36 68 728
30 % 36 133 284
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 350
95 % 36 68 518
90 % 36 68 547
70 % 36 68 601
50 % 36 68 692
40 % 36 137 259
30 % 43 413 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1885
95 % 36 68 516
90 % 36 68 545
70 % 36 68 598
50 % 36 133 242
40 % 36 135 262
30 % 36 135 274
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47782
95 % 36 74 448
90 % 36 74 475
70 % 36 74 519
50 % 36 74 596
40 % 36 142 250
30 % 36 142 261
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8867
95 % 36 74 451
90 % 36 74 478
70 % 36 74 522
50 % 36 74 598
40 % 36 76 625
30 % 36 77 612
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 457
90 % 36 74 483
70 % 36 74 525
50 % 36 74 601
40 % 37 142 252
30 % 37 142 263
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1920
95 % 3 21 2498
90 % 36 68 554
70 % 36 68 607
50 % 51 95 347
40 % 58 109 309
30 % 58 111 320
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56164
95 % 1 1 38928
90 % 1 7 9023
70 % 3 27 1875
50 % 36 74 602
40 % 36 79 585
30 % 36 79 591
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 459
90 % 36 74 485
70 % 36 74 530
50 % 36 74 607
40 % 37 77 611
30 % 37 78 605

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 14 L 50S ribosomal protein L15P 2238
2 1VQO 14 L 50S ribosomal protein L15P 2238
3 1VQ8 14 L 50S ribosomal protein L15P 2238
4 1S72 14 L 50S ribosomal protein L15P 2238
5 1JJ2 13 K RIBOSOMAL PROTEIN L15 2238
6 1YHQ 14 L 50S ribosomal protein L15P 2238
7 1VQP 14 L 50S ribosomal protein L15P 2238
8 1VQM 14 L 50S ribosomal protein L15P 2238
9 3CC2 12 L 50S ribosomal protein L15P 2238
10 1VQL 14 L 50S ribosomal protein L15P 2238
11 1VQK 14 L 50S ribosomal protein L15P 2238
12 1VQN 15 L 50S ribosomal protein L15P 2238
13 1YIJ 14 L 50S ribosomal protein L15P 2238
14 1YI2 14 L 50S ribosomal protein L15P 2238
15 1VQ9 14 L 50S ribosomal protein L15P 2238
16 1VQ7 14 L 50S ribosomal protein L15P 2238
17 3CCM 12 L 50S ribosomal protein L15P 2238
18 1VQ5 14 L 50S ribosomal protein L15P 2238
19 3CCJ 12 L 50S ribosomal protein L15P 2238
20 3CC7 12 L 50S ribosomal protein L15P 2238
21 1YIT 18 L 50S RIBOSOMAL PROTEIN L15P 2238
22 3CCE 12 L 50S ribosomal protein L15P 2238
23 3G6E 13 L 50S ribosomal protein L15P 2238
24 3CPW 13 K 50S ribosomal protein L15P 2238
25 3CCU 12 L 50S ribosomal protein L15P 2238
26 1VQ6 15 L 50S ribosomal protein L15P 2238
27 1M90 14 M RIBOSOMAL PROTEIN L15 2238
28 3CCL 12 L 50S ribosomal protein L15P 2238
29 1YJW 18 L 50S RIBOSOMAL PROTEIN L15P 2238
30 1YJ9 14 L 50S ribosomal protein L15P 2238
31 3CD6 12 L 50S ribosomal protein L15P 2238
32 3CCV 12 L 50S ribosomal protein L15P 2238
33 3CC4 12 L 50S ribosomal protein L15P 2238
34 2OTL 13 L 50S ribosomal protein L15P 2238
35 3G71 13 L 50S ribosomal protein L15P 2238
36 1FFK 12 J RIBOSOMAL PROTEIN L15 2238
37 1VQ4 14 L 50S ribosomal protein L15P 2238
38 1YJN 14 L 50S ribosomal protein L15P 2238
39 3CMA 12 L 50S ribosomal protein L15P 2238
40 3CCS 12 L 50S ribosomal protein L15P 2238
41 3CCQ 12 L 50S ribosomal protein L15P 2238
42 3I56 12 L 50S ribosomal protein L15P 2238
43 3CCR 12 L 50S ribosomal protein L15P 2238
44 2OTJ 13 L 50S ribosomal protein L15P 2238
45 1KQS 15 K RIBOSOMAL PROTEIN L15 2238
46 3OW2 13 K 50S ribosomal protein L15P 2238
47 3CXC 14 K RIBOSOMAL PROTEIN L15 2238
48 1QVG 14 K 50S ribosomal protein L15P 2238
49 3CME 12 L 50S ribosomal protein L15P 2238
50 2QEX 13 L 50S ribosomal protein L15P 2238
51 1KC8 13 M RIBOSOMAL PROTEIN L15 2238
52 1N8R 13 M 50S ribosomal protein L15P 2238
53 1Q81 14 M 50S ribosomal protein L15P 2238
54 1Q82 14 M 50S ribosomal protein L15P 2238
55 1QVF 14 K 50S ribosomal protein L15P 2238
56 1NJI 13 M 50S ribosomal protein L15P 2238
57 1K73 13 M RIBOSOMAL PROTEIN L15 2238
58 1K9M 13 M RIBOSOMAL PROTEIN L15 2238
59 1KD1 13 M RIBOSOMAL PROTEIN L15 2238
60 3I55 13 L 50S ribosomal protein L15P 2238
61 1K8A 13 M RIBOSOMAL PROTEIN L15 2238
62 1Q86 14 M 50S ribosomal protein L15P 2238
63 1M1K 13 M RIBOSOMAL PROTEIN L15 2238
64 3G4S 13 L 50S ribosomal protein L15P 2238
65 1W2B 16 K 50S RIBOSOMAL PROTEIN L15P 2238
66 2QA4 14 L 50S ribosomal protein L15P 2238
67 1Q7Y 14 M 50S ribosomal protein L15P 2238
68 4V4P 14 AO 50S ribosomal protein L15 274
69 4V4R 36 BP 50S ribosomal protein L15 274
70 4V4S 36 BP 50S ribosomal protein L15 274
71 4V4T 35 BP 50S ribosomal protein L15 274
72 4ADX 22 L RPL15 145262
73 1ML5 36 o 50S RIBOSOMAL PROTEIN L15 562
74 4V42 38 BO 50S RIBOSOMAL PROTEIN L15 274