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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 514 Members. Sequence cutoff: 50% Cluster size: 74 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 14 L 50S ribosomal protein L15P 272569  
2 1VQO 14 L 50S ribosomal protein L15P 2238  
3 1VQ8 14 L 50S ribosomal protein L15P 2238  
4 1S72 14 L 50S ribosomal protein L15P 2238  
5 1JJ2 13 K RIBOSOMAL PROTEIN L15 2238  
6 1YHQ 14 L 50S ribosomal protein L15P 2238  
7 1VQP 14 L 50S ribosomal protein L15P 2238  
8 1VQM 14 L 50S ribosomal protein L15P 2238  
9 3CC2 12 L 50S ribosomal protein L15P 2238  
10 1VQL 14 L 50S ribosomal protein L15P 2238  
11 1VQK 14 L 50S ribosomal protein L15P 2238  
12 1VQN 15 L 50S ribosomal protein L15P 2238  
13 1YIJ 14 L 50S ribosomal protein L15P 2238  
14 1YI2 14 L 50S ribosomal protein L15P 2238  
15 1VQ9 14 L 50S ribosomal protein L15P 2238  
16 1VQ7 14 L 50S ribosomal protein L15P 2238  
17 3CCM 12 L 50S ribosomal protein L15P 272569  
18 1VQ5 14 L 50S ribosomal protein L15P 2238  
19 3CCJ 12 L 50S ribosomal protein L15P 272569  
20 3CC7 12 L 50S ribosomal protein L15P 2238  
21 1YIT 18 L 50S RIBOSOMAL PROTEIN L15P 2238  
22 3CCE 12 L 50S ribosomal protein L15P 272569  
23 3G6E 13 L 50S ribosomal protein L15P 2238  
24 3CPW 13 K 50S ribosomal protein L15P 2238  
25 3CCU 12 L 50S ribosomal protein L15P 272569  
26 1VQ6 15 L 50S ribosomal protein L15P 2238  
27 1M90 14 M RIBOSOMAL PROTEIN L15 2238  
28 3CCL 12 L 50S ribosomal protein L15P 272569  
29 1YJW 18 L 50S RIBOSOMAL PROTEIN L15P 2238  
30 1YJ9 14 L 50S ribosomal protein L15P 2238  
31 3CD6 12 L 50S ribosomal protein L15P 272569  
32 3CCV 12 L 50S ribosomal protein L15P 272569  
33 3CC4 12 L 50S ribosomal protein L15P 272569  
34 2OTL 13 L 50S ribosomal protein L15P 2238  
35 3G71 13 L 50S ribosomal protein L15P 2238  
36 1FFK 12 J RIBOSOMAL PROTEIN L15 2238  
37 1VQ4 14 L 50S ribosomal protein L15P 2238  
38 1YJN 14 L 50S ribosomal protein L15P 2238  
39 3CMA 12 L 50S ribosomal protein L15P 2238  
40 3CCS 12 L 50S ribosomal protein L15P 272569  
41 3CCQ 12 L 50S ribosomal protein L15P 272569  
42 3I56 12 L 50S ribosomal protein L15P 2238  
43 3CCR 12 L 50S ribosomal protein L15P 272569  
44 2OTJ 13 L 50S ribosomal protein L15P 2238  
45 1KQS 15 K RIBOSOMAL PROTEIN L15 2238  
46 3OW2 13 K 50S ribosomal protein L15P 2238  
47 3CXC 14 K RIBOSOMAL PROTEIN L15 2238  
48 1QVG 14 K 50S ribosomal protein L15P 2238  
49 3CME 12 L 50S ribosomal protein L15P 2238  
50 2QEX 13 L 50S ribosomal protein L15P 2238  
51 1KC8 13 M RIBOSOMAL PROTEIN L15 2238  
52 1N8R 13 M 50S ribosomal protein L15P 2238  
53 1Q81 14 M 50S ribosomal protein L15P 2238  
54 1Q82 14 M 50S ribosomal protein L15P 2238  
55 1QVF 14 K 50S ribosomal protein L15P 2238  
56 1NJI 13 M 50S ribosomal protein L15P 2238  
57 1K73 13 M RIBOSOMAL PROTEIN L15 2238  
58 1K9M 13 M RIBOSOMAL PROTEIN L15 2238  
59 1KD1 13 M RIBOSOMAL PROTEIN L15 2238  
60 3I55 13 L 50S ribosomal protein L15P 2238  
61 1K8A 13 M RIBOSOMAL PROTEIN L15 2238  
62 1Q86 14 M 50S ribosomal protein L15P 2238  
63 1M1K 13 M RIBOSOMAL PROTEIN L15 2238  
64 3G4S 13 L 50S ribosomal protein L15P 2238  
65 1W2B 16 K 50S RIBOSOMAL PROTEIN L15P 2238  
66 2QA4 14 L 50S ribosomal protein L15P 2238  
67 1Q7Y 14 M 50S ribosomal protein L15P 2238  
68 4V4P 14 AO 50S ribosomal protein L15 300852  
69 4V4R 36 BP 50S ribosomal protein L15 274  
70 4V4S 36 BP 50S ribosomal protein L15 274  
71 4V4T 35 BP 50S ribosomal protein L15 274  
72 4ADX 22 L RPL15 187420  
73 1ML5 36 o 50S RIBOSOMAL PROTEIN L15 562  
74 4V42 38 BO 50S RIBOSOMAL PROTEIN L15 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 655
95% 36 68 471
90% 36 68 492
70% 36 68 532
50% 36 120 236
40% 36 120 264
30% 41 332 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48863
95% 1 1 34223
90% 1 1 32723
70% 36 68 525
50% 36 118 243
40% 36 118 271
30% 36 118 291
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 413
90% 36 74 437
70% 36 74 467
50% 36 74 514
40% 36 74 552
30% 40 324 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 76 494
40% 36 76 530
30% 36 78 516
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 323
95% 36 68 473
90% 36 68 495
70% 36 68 535
50% 36 70 571
40% 36 70 602
30% 36 70 602
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1693
95% 36 68 469
90% 36 68 490
70% 36 68 530
50% 36 68 605
40% 36 70 599
30% 36 71 582
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 475
90% 36 68 497
70% 36 68 537
50% 36 70 574
40% 36 70 606
30% 36 71 584
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 467
90% 36 68 488
70% 36 68 528
50% 36 68 602
40% 36 68 634
30% 36 121 279
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 416
90% 36 74 440
70% 36 74 470
50% 36 76 495
40% 36 78 510
30% 40 284 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 415
90% 36 74 439
70% 36 74 469
50% 36 127 220
40% 36 127 247
30% 36 127 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 312
95% 34 70 451
90% 34 70 472
70% 34 70 508
50% 34 70 575
40% 34 70 607
30% 34 70 604
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 417
90% 36 74 441
70% 36 74 471
50% 36 74 516
40% 36 74 555
30% 36 74 550
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 468
90% 36 68 489
70% 36 68 529
50% 36 68 603
40% 36 70 598
30% 36 71 581
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 477
90% 36 68 499
70% 36 68 539
50% 36 68 609
40% 36 68 639
30% 36 68 632
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51852
95% 3 5 11468
90% 3 5 11281
70% 3 5 10655
50% 3 5 9571
40% 3 5 8731
30% 3 5 7643
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57516
95% 1 1 40056
90% 1 1 38303
70% 3 21 2285
50% 7 30 1560
40% 7 76 414
30% 26 99 337
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 479
90% 36 68 501
70% 36 68 541
50% 36 69 592
40% 36 69 625
30% 36 69 621
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58800
95% 36 68 480
90% 36 68 502
70% 36 68 542
50% 36 120 237
40% 36 120 266
30% 36 120 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 476
90% 36 68 498
70% 36 68 538
50% 36 68 608
40% 36 68 638
30% 36 119 288
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 320
95% 36 68 466
90% 36 68 487
70% 36 68 527
50% 36 68 601
40% 36 119 269
30% 41 327 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1676
95% 36 68 463
90% 36 68 485
70% 36 68 524
50% 36 118 242
40% 36 120 263
30% 36 120 282
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43093
95% 36 74 406
90% 36 74 430
70% 36 74 461
50% 36 74 507
40% 36 124 253
30% 36 124 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7922
95% 36 74 409
90% 36 74 433
70% 36 74 464
50% 36 74 509
40% 36 76 528
30% 36 77 522
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 412
90% 36 74 436
70% 36 74 466
50% 36 74 512
40% 36 124 255
30% 36 124 271
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1704
95% 3 21 2233
90% 36 68 494
70% 36 68 534
50% 51 95 307
40% 58 105 292
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50860
95% 1 1 35343
90% 1 7 8139
70% 3 27 1686
50% 36 74 513
40% 36 78 507
30% 36 78 517
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 414
90% 36 74 438
70% 36 74 468
50% 36 74 515
40% 37 77 520
30% 37 78 518
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.