Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 839
95 % 35 68 667 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 695
70 % 35 68 747
50 % 35 176 200
40 % 35 176 222
30 % 43 524 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59724
95 % 1 1 41643
90 % 1 1 39612
70 % 35 68 739
50 % 35 172 210
40 % 35 172 233
30 % 35 172 239
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 424
95 % 35 74 595 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 625
70 % 35 74 664
50 % 35 74 707
40 % 35 74 743
30 % 42 504 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 422
95 % 35 74 593 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 623
70 % 35 74 661
50 % 35 76 682
40 % 35 76 719
30 % 35 79 684
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 477
95 % 35 68 668 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 697
70 % 35 68 749
50 % 35 70 768
40 % 35 70 803
30 % 35 70 793
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2201
95 % 35 68 666 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 693
70 % 35 68 745
50 % 35 68 797
40 % 35 72 776
30 % 35 72 765
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 478
95 % 35 68 670 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 699
70 % 35 68 752
50 % 35 70 769
40 % 35 70 804
30 % 35 71 778
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 491
95 % 35 68 664 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 691
70 % 35 68 742
50 % 35 68 794
40 % 35 68 831
30 % 35 175 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 429
95 % 35 74 600 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 630
70 % 35 74 672
50 % 35 76 686
40 % 35 78 699
30 % 42 411 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 428
95 % 35 74 599 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 629
70 % 35 74 670
50 % 35 180 199
40 % 35 180 217
30 % 35 180 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 458
95 % 33 70 640 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 33 70 665
70 % 33 70 719
50 % 33 70 770
40 % 33 70 806
30 % 33 70 795
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 430
95 % 35 74 601
90 % 35 74 631
70 % 35 74 673
50 % 35 74 715
40 % 42 377 57
30 % 42 403 64
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 475
95 % 35 68 665 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 692
70 % 35 68 743
50 % 35 68 795
40 % 35 70 800
30 % 35 71 775
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 480
95 % 35 68 672 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 701
70 % 35 68 754
50 % 35 68 800
40 % 35 68 835
30 % 35 68 820
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63071
95 % 3 5 14163 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 13896
70 % 3 5 13038
50 % 3 5 11614
40 % 3 5 10531
30 % 3 5 9125
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69384
95 % 1 1 48079
90 % 1 1 45682
70 % 3 21 2891
50 % 7 30 1927
40 % 7 129 303
30 % 26 152 268
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 482
95 % 35 68 675 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 704
70 % 35 68 758
50 % 35 69 782
40 % 35 69 820
30 % 35 69 809
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70796
95 % 35 68 676 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 705
70 % 35 68 759
50 % 35 173 206
40 % 35 173 229
30 % 35 173 236
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 479
95 % 35 68 671 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 700
70 % 35 68 753
50 % 35 68 799
40 % 35 68 834
30 % 35 169 244
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 474
95 % 35 68 663 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 690
70 % 35 68 741
50 % 35 68 793
40 % 35 174 227
30 % 43 515 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2185
95 % 35 68 660 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 687
70 % 35 68 737
50 % 35 171 209
40 % 35 173 228
30 % 35 173 235
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52924
95 % 35 74 584 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 615
70 % 35 74 657
50 % 35 74 701
40 % 35 180 215
30 % 35 180 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 9993
95 % 35 74 589 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 621
70 % 35 74 659
50 % 35 74 703
40 % 35 76 717
30 % 36 78 691
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 423
95 % 35 74 594 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 624
70 % 35 74 662
50 % 35 74 705
40 % 36 180 216
30 % 36 180 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2213
95 % 3 21 2857 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 696
70 % 35 68 748
50 % 50 105 324
40 % 57 123 281
30 % 57 125 286
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61979
95 % 1 1 42893
90 % 1 7 10082
70 % 3 27 2150
50 % 35 74 706
40 % 35 79 688
30 % 35 79 686
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 425
95 % 35 74 596 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 626
70 % 35 74 667
50 % 35 74 711
40 % 36 77 712
30 % 36 78 695

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 14 L 50S ribosomal protein L15P 2238
2 1VQO 14 L 50S ribosomal protein L15P 2238
3 1VQ8 14 L 50S ribosomal protein L15P 2238
4 1S72 14 L 50S ribosomal protein L15P 2238
5 1JJ2 13 K RIBOSOMAL PROTEIN L15 2238
6 1YHQ 14 L 50S ribosomal protein L15P 2238
7 1VQP 14 L 50S ribosomal protein L15P 2238
8 1VQM 14 L 50S ribosomal protein L15P 2238
9 3CC2 12 L 50S ribosomal protein L15P 2238
10 1VQL 14 L 50S ribosomal protein L15P 2238
11 1VQK 14 L 50S ribosomal protein L15P 2238
12 1VQN 15 L 50S ribosomal protein L15P 2238
13 1YIJ 14 L 50S ribosomal protein L15P 2238
14 1YI2 14 L 50S ribosomal protein L15P 2238
15 1VQ9 14 L 50S ribosomal protein L15P 2238
16 1VQ7 14 L 50S ribosomal protein L15P 2238
17 3CCM 12 L 50S ribosomal protein L15P 2238
18 1VQ5 14 L 50S ribosomal protein L15P 2238
19 3CC7 12 L 50S ribosomal protein L15P 2238
20 1YIT 18 L 50S RIBOSOMAL PROTEIN L15P 2238
21 3CCE 12 L 50S ribosomal protein L15P 2238
22 3G6E 13 L 50S ribosomal protein L15P 2238
23 3CPW 13 K 50S ribosomal protein L15P 2238
24 3CCU 12 L 50S ribosomal protein L15P 2238
25 1VQ6 15 L 50S ribosomal protein L15P 2238
26 1M90 14 M RIBOSOMAL PROTEIN L15 2238
27 3CCL 12 L 50S ribosomal protein L15P 2238
28 1YJW 18 L 50S RIBOSOMAL PROTEIN L15P 2238
29 1YJ9 14 L 50S ribosomal protein L15P 2238
30 3CD6 12 L 50S ribosomal protein L15P 2238
31 3CCV 12 L 50S ribosomal protein L15P 2238
32 3CC4 12 L 50S ribosomal protein L15P 2238
33 2OTL 13 L 50S ribosomal protein L15P 2238
34 3G71 13 L 50S ribosomal protein L15P 2238
35 1FFK 12 J RIBOSOMAL PROTEIN L15 2238
36 1VQ4 14 L 50S ribosomal protein L15P 2238
37 1YJN 14 L 50S ribosomal protein L15P 2238
38 3CMA 12 L 50S ribosomal protein L15P 2238
39 3CCS 12 L 50S ribosomal protein L15P 2238
40 3CCQ 12 L 50S ribosomal protein L15P 2238
41 3I56 12 L 50S ribosomal protein L15P 2238
42 3CCR 12 L 50S ribosomal protein L15P 2238
43 2OTJ 13 L 50S ribosomal protein L15P 2238
44 1KQS 15 K RIBOSOMAL PROTEIN L15 2238
45 3OW2 13 K 50S ribosomal protein L15P 2238
46 3CXC 14 K RIBOSOMAL PROTEIN L15 2238
47 1QVG 14 K 50S ribosomal protein L15P 2238
48 3CME 12 L 50S ribosomal protein L15P 2238
49 2QEX 13 L 50S ribosomal protein L15P 2238
50 1KC8 13 M RIBOSOMAL PROTEIN L15 2238
51 1N8R 13 M 50S ribosomal protein L15P 2238
52 1Q81 14 M 50S ribosomal protein L15P 2238
53 1Q82 14 M 50S ribosomal protein L15P 2238
54 1QVF 14 K 50S ribosomal protein L15P 2238
55 1NJI 13 M 50S ribosomal protein L15P 2238
56 1K73 13 M RIBOSOMAL PROTEIN L15 2238
57 1K9M 13 M RIBOSOMAL PROTEIN L15 2238
58 1KD1 13 M RIBOSOMAL PROTEIN L15 2238
59 3I55 13 L 50S ribosomal protein L15P 2238
60 1K8A 13 M RIBOSOMAL PROTEIN L15 2238
61 1Q86 14 M 50S ribosomal protein L15P 2238
62 1M1K 13 M RIBOSOMAL PROTEIN L15 2238
63 3G4S 13 L 50S ribosomal protein L15P 2238
64 3CCJ 12 L 50S ribosomal protein L15P 2238
65 1W2B 16 K 50S RIBOSOMAL PROTEIN L15P 2238
66 2QA4 14 L 50S ribosomal protein L15P 2238
67 1Q7Y 14 M 50S ribosomal protein L15P 2238
68 4V4P 14 AO 50S ribosomal protein L15 274
69 4V4R 36 BP 50S ribosomal protein L15 274
70 4V4S 36 BP 50S ribosomal protein L15 274
71 4V4T 35 BP 50S ribosomal protein L15 274
72 4ADX 22 L RPL15 145262
73 1ML5 36 o 50S RIBOSOMAL PROTEIN L15 562
74 4V42 38 BO 50S RIBOSOMAL PROTEIN L15 274