Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 869
95 % 35 68 701 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 731
70 % 35 68 784
50 % 35 180 201
40 % 43 543 20
30 % 43 543 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61399
95 % 1 1 42847
90 % 1 1 40717
70 % 35 68 776
50 % 35 176 205
40 % 35 176 230
30 % 35 176 242
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 447
95 % 35 74 621 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 650
70 % 35 74 693
50 % 35 74 744
40 % 35 74 780
30 % 42 523 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 445
95 % 35 74 619 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 648
70 % 35 74 690
50 % 35 76 719
40 % 35 76 755
30 % 35 79 719
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 516
95 % 35 68 703 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 734
70 % 35 68 787
50 % 35 70 797
40 % 35 70 833
30 % 35 70 820
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2279
95 % 35 68 700 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 730
70 % 35 68 783
50 % 35 68 829
40 % 35 72 808
30 % 35 72 799
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 517
95 % 35 68 705 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 736
70 % 35 68 789
50 % 35 70 798
40 % 35 70 834
30 % 35 71 809
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 526
95 % 35 68 698 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 35 68 728
70 % 35 68 780
50 % 35 68 826
40 % 35 68 861
30 % 35 179 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 452
95 % 35 74 625 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 654
70 % 35 74 700
50 % 35 76 724
40 % 35 78 736
30 % 42 426 59
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 624 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 653
70 % 35 74 698
50 % 35 183 199
40 % 35 184 218
30 % 35 184 228
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 485
95 % 33 70 674 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 700
70 % 33 70 753
50 % 33 70 799
40 % 33 70 835
30 % 33 70 822
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 453
95 % 35 74 626 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 655
70 % 35 74 701
50 % 35 74 749
40 % 42 387 52
30 % 42 413 64
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 513
95 % 35 68 699 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 729
70 % 35 68 781
50 % 35 68 827
40 % 35 70 831
30 % 35 71 807
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 519
95 % 35 68 707 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 738
70 % 35 68 791
50 % 35 68 834
40 % 35 68 865
30 % 35 68 849
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64866
95 % 3 5 14601 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14329
70 % 3 5 13461
50 % 3 5 11956
40 % 3 5 10846
30 % 3 5 9412
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71346
95 % 1 1 49513
90 % 1 1 47002
70 % 3 21 2978
50 % 7 30 1986
40 % 7 134 287
30 % 26 157 264
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 520
95 % 35 68 708 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 739
70 % 35 68 792
50 % 35 69 813
40 % 35 69 847
30 % 35 69 837
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72797
95 % 35 68 709 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 35 68 740
70 % 35 68 793
50 % 35 177 203
40 % 35 177 226
30 % 35 177 237
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 518
95 % 35 68 706 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 737
70 % 35 68 790
50 % 35 68 833
40 % 35 68 864
30 % 35 173 245
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 512
95 % 35 68 697 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 726
70 % 35 68 778
50 % 35 68 825
40 % 35 178 222
30 % 43 534 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2262
95 % 35 68 695 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 724
70 % 35 68 775
50 % 35 175 204
40 % 35 177 225
30 % 35 177 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54443
95 % 35 74 611 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 35 74 642
70 % 35 74 686
50 % 35 74 737
40 % 35 184 216
30 % 35 184 226
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10302
95 % 35 74 615 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 646
70 % 35 74 688
50 % 35 74 739
40 % 35 76 753
30 % 36 78 729
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 446
95 % 35 74 620 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 649
70 % 35 74 691
50 % 35 74 742
40 % 36 184 217
30 % 36 184 227
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2291
95 % 3 21 2944 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 733
70 % 35 68 786
50 % 50 105 350
40 % 57 126 282
30 % 57 128 284
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63722
95 % 1 1 44150
90 % 1 7 10419
70 % 3 27 2219
50 % 35 74 743
40 % 35 79 724
30 % 35 79 721
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 449
95 % 35 74 622 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 651
70 % 35 74 696
50 % 35 74 748
40 % 36 77 747
30 % 36 78 733

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 14 L 50S ribosomal protein L15P 2238
2 1VQO 14 L 50S ribosomal protein L15P 2238
3 1VQ8 14 L 50S ribosomal protein L15P 2238
4 1S72 14 L 50S ribosomal protein L15P 2238
5 1JJ2 13 K RIBOSOMAL PROTEIN L15 2238
6 1YHQ 14 L 50S ribosomal protein L15P 2238
7 1VQP 14 L 50S ribosomal protein L15P 2238
8 1VQM 14 L 50S ribosomal protein L15P 2238
9 3CC2 12 L 50S ribosomal protein L15P 2238
10 1VQL 14 L 50S ribosomal protein L15P 2238
11 1VQK 14 L 50S ribosomal protein L15P 2238
12 1VQN 15 L 50S ribosomal protein L15P 2238
13 1YIJ 14 L 50S ribosomal protein L15P 2238
14 1YI2 14 L 50S ribosomal protein L15P 2238
15 1VQ9 14 L 50S ribosomal protein L15P 2238
16 1VQ7 14 L 50S ribosomal protein L15P 2238
17 3CCM 12 L 50S ribosomal protein L15P 2238
18 1VQ5 14 L 50S ribosomal protein L15P 2238
19 3CC7 12 L 50S ribosomal protein L15P 2238
20 1YIT 18 L 50S RIBOSOMAL PROTEIN L15P 2238
21 3CCE 12 L 50S ribosomal protein L15P 2238
22 3G6E 13 L 50S ribosomal protein L15P 2238
23 3CPW 13 K 50S ribosomal protein L15P 2238
24 3CCU 12 L 50S ribosomal protein L15P 2238
25 1VQ6 15 L 50S ribosomal protein L15P 2238
26 1M90 14 M RIBOSOMAL PROTEIN L15 2238
27 3CCL 12 L 50S ribosomal protein L15P 2238
28 1YJW 18 L 50S RIBOSOMAL PROTEIN L15P 2238
29 1YJ9 14 L 50S ribosomal protein L15P 2238
30 3CD6 12 L 50S ribosomal protein L15P 2238
31 3CCV 12 L 50S ribosomal protein L15P 2238
32 3CC4 12 L 50S ribosomal protein L15P 2238
33 2OTL 13 L 50S ribosomal protein L15P 2238
34 3G71 13 L 50S ribosomal protein L15P 2238
35 1FFK 12 J RIBOSOMAL PROTEIN L15 2238
36 1VQ4 14 L 50S ribosomal protein L15P 2238
37 1YJN 14 L 50S ribosomal protein L15P 2238
38 3CMA 12 L 50S ribosomal protein L15P 2238
39 3CCS 12 L 50S ribosomal protein L15P 2238
40 3CCQ 12 L 50S ribosomal protein L15P 2238
41 3I56 12 L 50S ribosomal protein L15P 2238
42 3CCR 12 L 50S ribosomal protein L15P 2238
43 2OTJ 13 L 50S ribosomal protein L15P 2238
44 1KQS 15 K RIBOSOMAL PROTEIN L15 2238
45 3OW2 13 K 50S ribosomal protein L15P 2238
46 3CXC 14 K RIBOSOMAL PROTEIN L15 2238
47 1QVG 14 K 50S ribosomal protein L15P 2238
48 3CME 12 L 50S ribosomal protein L15P 2238
49 2QEX 13 L 50S ribosomal protein L15P 2238
50 1KC8 13 M RIBOSOMAL PROTEIN L15 2238
51 1N8R 13 M 50S ribosomal protein L15P 2238
52 1Q81 14 M 50S ribosomal protein L15P 2238
53 1Q82 14 M 50S ribosomal protein L15P 2238
54 1QVF 14 K 50S ribosomal protein L15P 2238
55 1NJI 13 M 50S ribosomal protein L15P 2238
56 1K73 13 M RIBOSOMAL PROTEIN L15 2238
57 1K9M 13 M RIBOSOMAL PROTEIN L15 2238
58 1KD1 13 M RIBOSOMAL PROTEIN L15 2238
59 3I55 13 L 50S ribosomal protein L15P 2238
60 1K8A 13 M RIBOSOMAL PROTEIN L15 2238
61 1Q86 14 M 50S ribosomal protein L15P 2238
62 1M1K 13 M RIBOSOMAL PROTEIN L15 2238
63 3G4S 13 L 50S ribosomal protein L15P 2238
64 3CCJ 12 L 50S ribosomal protein L15P 2238
65 1W2B 16 K 50S RIBOSOMAL PROTEIN L15P 2238
66 2QA4 14 L 50S ribosomal protein L15P 2238
67 1Q7Y 14 M 50S ribosomal protein L15P 2238
68 4V4P 14 AO 50S ribosomal protein L15 274
69 4V4R 36 BP 50S ribosomal protein L15 274
70 4V4S 36 BP 50S ribosomal protein L15 274
71 4V4T 35 BP 50S ribosomal protein L15 274
72 4ADX 22 L RPL15 145262
73 1ML5 36 o 50S RIBOSOMAL PROTEIN L15 562
74 4V42 38 BO 50S RIBOSOMAL PROTEIN L15 274