Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 763
95 % 36 68 547
90 % 36 68 577
70 % 36 68 627
50 % 36 146 223
40 % 36 146 249
30 % 44 450 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56081
95 % 1 1 39110
90 % 1 1 37261
70 % 36 68 620
50 % 36 142 231
40 % 36 142 260
30 % 36 142 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 322
95 % 36 74 477
90 % 36 74 507
70 % 36 74 551
50 % 36 74 638
40 % 36 74 684
30 % 43 439 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 505
70 % 36 74 548
50 % 36 76 619
40 % 36 76 659
30 % 36 78 648
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 549
90 % 36 68 579
70 % 36 68 630
50 % 36 70 691
40 % 36 70 737
30 % 36 70 740
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2010
95 % 36 68 546
90 % 36 68 575
70 % 36 68 626
50 % 36 68 715
40 % 36 70 734
30 % 36 71 723
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 551
90 % 36 68 581
70 % 36 68 633
50 % 36 70 692
40 % 36 70 738
30 % 36 71 726
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 380
95 % 36 68 544
90 % 36 68 573
70 % 36 68 624
50 % 36 68 713
40 % 36 68 751
30 % 36 145 262
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 328
95 % 36 74 482
90 % 36 74 513
70 % 36 74 558
50 % 36 76 622
40 % 36 78 637
30 % 43 376 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 511
70 % 36 74 556
50 % 36 150 218
40 % 36 150 240
30 % 36 150 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 349
95 % 34 70 521
90 % 34 70 549
70 % 34 70 601
50 % 34 70 693
40 % 34 70 739
30 % 34 70 741
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 329
95 % 36 74 483
90 % 36 74 514
70 % 36 74 559
50 % 36 74 643
40 % 36 74 689
30 % 36 74 692
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 68 714
40 % 36 70 732
30 % 36 71 722
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 553
90 % 36 68 583
70 % 36 68 635
50 % 36 68 719
40 % 36 68 755
30 % 36 68 759
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59312
95 % 3 5 13235
90 % 3 5 12995
70 % 3 5 12228
50 % 3 5 10936
40 % 3 5 9948
30 % 3 5 8649
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65429
95 % 1 1 45371
90 % 1 1 43207
70 % 3 21 2661
50 % 7 30 1792
40 % 7 99 369
30 % 26 122 316
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 372
95 % 36 68 554
90 % 36 68 584
70 % 36 68 636
50 % 36 69 703
40 % 36 69 746
30 % 36 69 752
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66792
95 % 36 68 556
90 % 36 68 586
70 % 36 68 637
50 % 36 143 226
40 % 36 143 254
30 % 36 143 264
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 552
90 % 36 68 582
70 % 36 68 634
50 % 36 68 718
40 % 36 68 754
30 % 36 140 274
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 543
90 % 36 68 572
70 % 36 68 623
50 % 36 68 712
40 % 36 145 251
30 % 44 445 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1987
95 % 36 68 541
90 % 36 68 569
70 % 36 68 619
50 % 36 141 230
40 % 36 143 253
30 % 36 143 263
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49593
95 % 36 74 468
90 % 36 74 498
70 % 36 74 544
50 % 36 74 632
40 % 36 150 238
30 % 36 150 251
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9274
95 % 36 74 471
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 36 76 658
30 % 36 77 658
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 549
50 % 36 74 636
40 % 37 151 237
30 % 37 151 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2019
95 % 3 21 2614
90 % 36 68 578
70 % 36 68 628
50 % 51 103 297
40 % 58 117 270
30 % 58 119 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58257
95 % 1 1 40327
90 % 1 7 9427
70 % 3 27 1962
50 % 36 74 637
40 % 36 79 629
30 % 36 79 641
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 478
90 % 36 74 509
70 % 36 74 554
50 % 36 74 641
40 % 37 77 649
30 % 37 78 651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 14 L 50S ribosomal protein L15P 2238
2 1VQO 14 L 50S ribosomal protein L15P 2238
3 1VQ8 14 L 50S ribosomal protein L15P 2238
4 1S72 14 L 50S ribosomal protein L15P 2238
5 1JJ2 13 K RIBOSOMAL PROTEIN L15 2238
6 1YHQ 14 L 50S ribosomal protein L15P 2238
7 1VQP 14 L 50S ribosomal protein L15P 2238
8 1VQM 14 L 50S ribosomal protein L15P 2238
9 3CC2 12 L 50S ribosomal protein L15P 2238
10 1VQL 14 L 50S ribosomal protein L15P 2238
11 1VQK 14 L 50S ribosomal protein L15P 2238
12 1VQN 15 L 50S ribosomal protein L15P 2238
13 1YIJ 14 L 50S ribosomal protein L15P 2238
14 1YI2 14 L 50S ribosomal protein L15P 2238
15 1VQ9 14 L 50S ribosomal protein L15P 2238
16 1VQ7 14 L 50S ribosomal protein L15P 2238
17 3CCM 12 L 50S ribosomal protein L15P 2238
18 1VQ5 14 L 50S ribosomal protein L15P 2238
19 3CCJ 12 L 50S ribosomal protein L15P 2238
20 3CC7 12 L 50S ribosomal protein L15P 2238
21 1YIT 18 L 50S RIBOSOMAL PROTEIN L15P 2238
22 3CCE 12 L 50S ribosomal protein L15P 2238
23 3G6E 13 L 50S ribosomal protein L15P 2238
24 3CPW 13 K 50S ribosomal protein L15P 2238
25 3CCU 12 L 50S ribosomal protein L15P 2238
26 1VQ6 15 L 50S ribosomal protein L15P 2238
27 1M90 14 M RIBOSOMAL PROTEIN L15 2238
28 3CCL 12 L 50S ribosomal protein L15P 2238
29 1YJW 18 L 50S RIBOSOMAL PROTEIN L15P 2238
30 1YJ9 14 L 50S ribosomal protein L15P 2238
31 3CD6 12 L 50S ribosomal protein L15P 2238
32 3CCV 12 L 50S ribosomal protein L15P 2238
33 3CC4 12 L 50S ribosomal protein L15P 2238
34 2OTL 13 L 50S ribosomal protein L15P 2238
35 3G71 13 L 50S ribosomal protein L15P 2238
36 1FFK 12 J RIBOSOMAL PROTEIN L15 2238
37 1VQ4 14 L 50S ribosomal protein L15P 2238
38 1YJN 14 L 50S ribosomal protein L15P 2238
39 3CMA 12 L 50S ribosomal protein L15P 2238
40 3CCS 12 L 50S ribosomal protein L15P 2238
41 3CCQ 12 L 50S ribosomal protein L15P 2238
42 3I56 12 L 50S ribosomal protein L15P 2238
43 3CCR 12 L 50S ribosomal protein L15P 2238
44 2OTJ 13 L 50S ribosomal protein L15P 2238
45 1KQS 15 K RIBOSOMAL PROTEIN L15 2238
46 3OW2 13 K 50S ribosomal protein L15P 2238
47 3CXC 14 K RIBOSOMAL PROTEIN L15 2238
48 1QVG 14 K 50S ribosomal protein L15P 2238
49 3CME 12 L 50S ribosomal protein L15P 2238
50 2QEX 13 L 50S ribosomal protein L15P 2238
51 1KC8 13 M RIBOSOMAL PROTEIN L15 2238
52 1N8R 13 M 50S ribosomal protein L15P 2238
53 1Q81 14 M 50S ribosomal protein L15P 2238
54 1Q82 14 M 50S ribosomal protein L15P 2238
55 1QVF 14 K 50S ribosomal protein L15P 2238
56 1NJI 13 M 50S ribosomal protein L15P 2238
57 1K73 13 M RIBOSOMAL PROTEIN L15 2238
58 1K9M 13 M RIBOSOMAL PROTEIN L15 2238
59 1KD1 13 M RIBOSOMAL PROTEIN L15 2238
60 3I55 13 L 50S ribosomal protein L15P 2238
61 1K8A 13 M RIBOSOMAL PROTEIN L15 2238
62 1Q86 14 M 50S ribosomal protein L15P 2238
63 1M1K 13 M RIBOSOMAL PROTEIN L15 2238
64 3G4S 13 L 50S ribosomal protein L15P 2238
65 1W2B 16 K 50S RIBOSOMAL PROTEIN L15P 2238
66 2QA4 14 L 50S ribosomal protein L15P 2238
67 1Q7Y 14 M 50S ribosomal protein L15P 2238
68 4V4P 14 AO 50S ribosomal protein L15 274
69 4V4R 36 BP 50S ribosomal protein L15 274
70 4V4S 36 BP 50S ribosomal protein L15 274
71 4V4T 35 BP 50S ribosomal protein L15 274
72 4ADX 22 L RPL15 145262
73 1ML5 36 o 50S RIBOSOMAL PROTEIN L15 562
74 4V42 38 BO 50S RIBOSOMAL PROTEIN L15 274