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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 35302 Members. Sequence cutoff: 95% Cluster size: 1 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1FFK 11 I RIBOSOMAL PROTEIN L15E 2238  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 680
95% 36 68 483
90% 36 68 506
70% 36 68 546
50% 36 123 238
40% 36 123 267
30% 41 360 46
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50394
95% 1 1 35302
90% 1 1 33721
70% 36 68 539
50% 36 121 245
40% 36 121 272
30% 36 121 289
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 420
90% 36 74 447
70% 36 74 480
50% 36 74 534
40% 36 74 576
30% 40 352 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 418
90% 36 74 445
70% 36 74 477
50% 36 76 507
40% 36 76 552
30% 36 78 535
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 485
90% 36 68 509
70% 36 68 549
50% 36 70 595
40% 36 70 632
30% 36 70 632
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1758
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 68 626
40% 36 70 631
30% 36 71 611
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 486
90% 36 68 510
70% 36 68 551
50% 36 70 597
40% 36 70 635
30% 36 71 612
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 479
90% 36 68 502
70% 36 68 542
50% 36 68 623
40% 36 68 656
30% 36 124 276
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 298
95% 36 74 424
90% 36 74 451
70% 36 74 485
50% 36 76 510
40% 36 78 528
30% 40 309 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 422
90% 36 74 449
70% 36 74 483
50% 36 130 223
40% 36 130 248
30% 36 130 262
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 317
95% 34 70 463
90% 34 70 485
70% 34 70 520
50% 34 70 598
40% 34 70 636
30% 34 70 634
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 300
95% 36 74 425
90% 36 74 452
70% 36 74 486
50% 36 74 541
40% 36 74 582
30% 36 74 577
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 480
90% 36 68 503
70% 36 68 543
50% 36 68 624
40% 36 70 630
30% 36 71 610
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 488
90% 36 68 512
70% 36 68 553
50% 36 68 629
40% 36 68 660
30% 36 68 657
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53419
95% 3 5 11800
90% 3 5 11604
70% 3 5 10955
50% 3 5 9834
40% 3 5 8984
30% 3 5 7849
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59170
95% 1 1 41194
90% 1 1 39352
70% 3 21 2365
50% 7 30 1605
40% 7 79 410
30% 26 102 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 490
90% 36 68 514
70% 36 68 555
50% 36 69 615
40% 36 69 650
30% 36 69 647
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60478
95% 36 68 491
90% 36 68 515
70% 36 68 556
50% 36 123 239
40% 36 123 268
30% 36 123 284
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 487
90% 36 68 511
70% 36 68 552
50% 36 68 628
40% 36 68 659
30% 36 122 288
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 622
40% 36 122 270
30% 41 355 49
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1738
95% 36 68 475
90% 36 68 498
70% 36 68 536
50% 36 121 244
40% 36 123 266
30% 36 123 283
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44491
95% 36 74 411
90% 36 74 438
70% 36 74 473
50% 36 74 525
40% 36 127 255
30% 36 127 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8206
95% 36 74 415
90% 36 74 442
70% 36 74 476
50% 36 74 527
40% 36 76 547
30% 36 77 541
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 419
90% 36 74 446
70% 36 74 478
50% 36 74 531
40% 36 128 251
30% 36 128 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1769
95% 3 21 2313
90% 36 68 508
70% 36 68 548
50% 51 95 319
40% 58 105 298
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52428
95% 1 1 36435
90% 1 7 8388
70% 3 27 1741
50% 36 74 532
40% 36 79 517
30% 36 79 527
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 421
90% 36 74 448
70% 36 74 482
50% 36 74 536
40% 37 77 538
30% 37 78 536
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.