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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 245 Members. Sequence cutoff: 50% Cluster size: 121 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 15 M 50S ribosomal protein L15e 272569  
2 1VQO 15 M 50S Ribosomal Protein L15E 2238  
3 1VQ8 15 M 50S Ribosomal Protein L15E 2238  
4 1S72 15 M 50S ribosomal protein L15e 2238  
5 1JJ2 14 L RIBOSOMAL PROTEIN L15E 2238  
6 1YHQ 15 M 50S Ribosomal Protein L15E 2238  
7 1VQP 15 M 50S Ribosomal Protein L15E 2238  
8 1VQM 15 M 50S Ribosomal Protein L15E 2238  
9 3CC2 13 M 50S ribosomal protein L15e 2238  
10 1VQL 15 M 50S Ribosomal Protein L15E 2238  
11 1VQK 15 M 50S Ribosomal Protein L15E 2238  
12 1VQN 16 M 50S Ribosomal Protein L15E 2238  
13 1YIJ 15 M 50S Ribosomal Protein L15E 2238  
14 1YI2 15 M 50S Ribosomal Protein L15E 2238  
15 1VQ9 15 M 50S Ribosomal Protein L15E 2238  
16 1VQ7 15 M 50S Ribosomal Protein L15E 2238  
17 3CCM 13 M 50S ribosomal protein L15e 2238  
18 1VQ5 15 M 50S Ribosomal Protein L15E 2238  
19 3CCJ 13 M 50S ribosomal protein L15e 2238  
20 3CC7 13 M 50S ribosomal protein L15e 2238  
21 1YIT 19 M 50S RIBOSOMAL PROTEIN L15E 2238  
22 3CCE 13 M 50S ribosomal protein L15e 2238  
23 3G6E 14 M 50S ribosomal protein L15e 2238  
24 3CPW 14 L 50S ribosomal protein L15e 2238  
25 3CCU 13 M 50S ribosomal protein L15e 2238  
26 1VQ6 16 M 50S Ribosomal Protein L15E 2238  
27 1M90 15 N RIBOSOMAL PROTEIN L15E 2238  
28 3CCL 13 M 50S ribosomal protein L15e 2238  
29 1YJW 19 M 50S RIBOSOMAL PROTEIN L15E 2238  
30 1YJ9 15 M 50S Ribosomal Protein L15E 2238  
31 3CD6 13 M 50S ribosomal protein L15e 2238  
32 3CCV 13 M 50S ribosomal protein L15e 2238  
33 3CC4 13 M 50S ribosomal protein L15e 2238  
34 2OTL 14 M 50S ribosomal protein L15e 2238  
35 3G71 14 M 50S ribosomal protein L15e 2238  
36 1FFK 11 I RIBOSOMAL PROTEIN L15E 2238  
37 1VQ4 15 M 50S Ribosomal Protein L15E 2238  
38 1YJN 15 M 50S Ribosomal Protein L15E 2238  
39 3CMA 13 M 50S ribosomal protein L15e 2238  
40 3CCS 13 M 50S ribosomal protein L15e 2238  
41 3CCQ 13 M 50S ribosomal protein L15e 2238  
42 3I56 13 M 50S ribosomal protein L15e 2238  
43 3CCR 13 M 50S ribosomal protein L15e 2238  
44 2OTJ 14 M 50S ribosomal protein L15e 2238  
45 4V88 51 BN, DN 60S ribosomal protein L15-A 559292  
46 1KQS 16 L RIBOSOMAL PROTEIN L15E 2238  
47 3OW2 14 L 50S ribosomal protein L15e 2238  
48 4U4R 51 M5, m5 60S ribosomal protein L15-A 559292  
49 3CXC 15 L RIBOSOMAL PROTEIN L15E 2238  
50 1QVG 15 L L15 Ribosomal Protein 2238  
51 3CME 13 M 50S ribosomal protein L15e 2238  
52 2QEX 14 M 50S ribosomal protein L15e 2238  
53 4U3U 51 M5, m5 60S ribosomal protein L15-A 559292  
54 1KC8 14 N RIBOSOMAL PROTEIN L15E 2238  
55 4U3M 51 M5, m5 60S ribosomal protein L15-A 559292  
56 1N8R 14 N 50S ribosomal protein L15E 2238  
57 4U3N 51 M5, m5 60S ribosomal protein L15-A 559292  
58 1Q81 15 N L15 Ribosomal Protein 2238  
59 1Q82 15 N L15 Ribosomal Protein 2238  
60 1QVF 15 L L15 Ribosomal Protein 2238  
61 4U52 51 M5, m5 60S ribosomal protein L15-A 559292  
62 4U4Q 51 M5, m5 60S ribosomal protein L15-A 559292  
63 1NJI 14 N 50S ribosomal protein L15E 2238  
64 4U6F 51 M5, m5 60S ribosomal protein L15-A 559292  
65 4U4U 51 M5, m5 60S ribosomal protein L15-A 559292  
66 1K73 14 N RIBOSOMAL PROTEIN L15E 2238  
67 4U4Z 51 M5, m5 60S ribosomal protein L15-A 559292  
68 4U4Y 51 M5, m5 60S ribosomal protein L15-A 559292  
69 4U4N 51 M5, m5 60S ribosomal protein L15-A 559292  
70 4U55 51 M5, m5 60S ribosomal protein L15-A 559292  
71 1K9M 14 N RIBOSOMAL PROTEIN L15E 2238  
72 1KD1 14 N RIBOSOMAL PROTEIN L15E 2238  
73 3I55 14 M 50S ribosomal protein L15e 2238  
74 4U51 51 M5, m5 60S ribosomal protein L15-A 559292  
75 1K8A 14 N RIBOSOMAL PROTEIN L15E 2238  
76 4U53 51 M5, m5 60S ribosomal protein L15-A 559292  
77 1Q86 15 N L15 Ribosomal Protein 2238  
78 4U50 51 M5, m5 60S ribosomal protein L15-A 559292  
79 1M1K 14 N RIBOSOMAL PROTEIN L15E 2238  
80 3G4S 14 M 50S ribosomal protein L15e 2238  
81 1W2B 17 L 50S RIBOSOMAL PROTEIN L15E 2238  
82 4U56 51 M5, m5 60S ribosomal protein L15-A 559292  
83 2QA4 15 M 50S ribosomal protein L15e 2238  
84 1Q7Y 15 N L15 Ribosomal Protein 2238  
85 4U4O 51 M5, m5 60S ribosomal protein L15-A 559292  
86 4V8P 33 BL, CL, EL, GL RIBOSOMAL PROTEIN L15 5911  
87 4V7R 44 BO, DO 60S ribosomal protein L15-A 4932  
88 4UG0 16 LN 60S RIBOSOMAL PROTEIN L15 9606  
89 5AJ0 16 AN 60S ribosomal protein L15 9606  
90 3J92 13 N eL15 9986  
91 4D67 13 N 60S RIBOSOMAL PROTEIN L15 9986  
92 4D5Y 13 N 60S RIBOSOMAL PROTEIN EL15 9986  
93 4V3P 42 LP Ribosomal protein L15 4565  
94 3J7O 16 N Ribosomal protein eL15 9823  
95 3J7P 17 N Ribosomal protein eL15 9823  
96 3J7Q 16 N Ribosomal protein eL15 9823  
97 3J7R 16 N Ribosomal protein eL15 9823  
98 4UJC 19 BN 60S RIBOSOMAL PROTEIN L15 9986  
99 4UJD 16 AN 60S RIBOSOMAL PROTEIN L15 9986  
100 3J79 16 P 60S ribosomal protein eL15 36329  
101 3J77 15 65 60S ribosomal protein L15 4932  
102 3J78 15 65 60S ribosomal protein L15 4932  
103 3J6X 17 55 60S ribosomal protein L15 580240  
104 3J6Y 17 55 60S ribosomal protein L15 580240  
105 4UJE 50 CN 60S RIBOSOMAL PROTEIN L15 9986  
106 4V91 16 N EL15 RIBOSOMAL PROTEIN EL15 28985  
107 4V7F 18 O 60S ribosomal protein L15 4932  
108 4V7E 45 CN 60S ribosomal protein L15E 4565  
109 4V8Y 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932  
110 4V8Z 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932  
111 4V4N 60 AM 50S ribosomal protein L15E SEE REMARK 999 2190  
112 4V6W 46 CN 60S ribosomal protein L15 7227  
113 4V6X 46 CN 60S ribosomal protein L15 9606  
114 4V8M 50 BQ RIBOSOMAL PROTEIN L15 185431  
115 4V6U 59 BM 50S ribosomal protein L15e 186497  
116 4V8T 14 N 60S RIBOSOMAL PROTEIN L15-A 559292  
117 4ADX 23 M RPL15E 187420  
118 4V6I 43 BP 60S ribosomal protein rpL15 (L15e) 4932  
119 4V7H 36 BL 60S ribosomal protein L15(A) 5541  
120 4V5Z 65 Bm 60S Ribosomal protein L15e 9615  
121 4V4B 31 BL 60S ribosomal protein L15-A 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 680
95% 36 68 483
90% 36 68 506
70% 36 68 546
50% 36 123 238
40% 36 123 267
30% 41 360 46
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50394
95% 1 1 35302
90% 1 1 33721
70% 36 68 539
50% 36 121 245
40% 36 121 272
30% 36 121 289
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 420
90% 36 74 447
70% 36 74 480
50% 36 74 534
40% 36 74 576
30% 40 352 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 418
90% 36 74 445
70% 36 74 477
50% 36 76 507
40% 36 76 552
30% 36 78 535
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 485
90% 36 68 509
70% 36 68 549
50% 36 70 595
40% 36 70 632
30% 36 70 632
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1758
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 68 626
40% 36 70 631
30% 36 71 611
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 486
90% 36 68 510
70% 36 68 551
50% 36 70 597
40% 36 70 635
30% 36 71 612
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 479
90% 36 68 502
70% 36 68 542
50% 36 68 623
40% 36 68 656
30% 36 124 276
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 298
95% 36 74 424
90% 36 74 451
70% 36 74 485
50% 36 76 510
40% 36 78 528
30% 40 309 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 422
90% 36 74 449
70% 36 74 483
50% 36 130 223
40% 36 130 248
30% 36 130 262
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 317
95% 34 70 463
90% 34 70 485
70% 34 70 520
50% 34 70 598
40% 34 70 636
30% 34 70 634
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 300
95% 36 74 425
90% 36 74 452
70% 36 74 486
50% 36 74 541
40% 36 74 582
30% 36 74 577
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 480
90% 36 68 503
70% 36 68 543
50% 36 68 624
40% 36 70 630
30% 36 71 610
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 488
90% 36 68 512
70% 36 68 553
50% 36 68 629
40% 36 68 660
30% 36 68 657
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53419
95% 3 5 11800
90% 3 5 11604
70% 3 5 10955
50% 3 5 9834
40% 3 5 8984
30% 3 5 7849
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59170
95% 1 1 41194
90% 1 1 39352
70% 3 21 2365
50% 7 30 1605
40% 7 79 410
30% 26 102 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 490
90% 36 68 514
70% 36 68 555
50% 36 69 615
40% 36 69 650
30% 36 69 647
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60478
95% 36 68 491
90% 36 68 515
70% 36 68 556
50% 36 123 239
40% 36 123 268
30% 36 123 284
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 487
90% 36 68 511
70% 36 68 552
50% 36 68 628
40% 36 68 659
30% 36 122 288
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 622
40% 36 122 270
30% 41 355 49
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1738
95% 36 68 475
90% 36 68 498
70% 36 68 536
50% 36 121 244
40% 36 123 266
30% 36 123 283
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44491
95% 36 74 411
90% 36 74 438
70% 36 74 473
50% 36 74 525
40% 36 127 255
30% 36 127 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8206
95% 36 74 415
90% 36 74 442
70% 36 74 476
50% 36 74 527
40% 36 76 547
30% 36 77 541
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 419
90% 36 74 446
70% 36 74 478
50% 36 74 531
40% 36 128 251
30% 36 128 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1769
95% 3 21 2313
90% 36 68 508
70% 36 68 548
50% 51 95 319
40% 58 105 298
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52428
95% 1 1 36435
90% 1 7 8388
70% 3 27 1741
50% 36 74 532
40% 36 79 517
30% 36 79 527
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 421
90% 36 74 448
70% 36 74 482
50% 36 74 536
40% 37 77 538
30% 37 78 536
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.