Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 763
95 % 36 68 547
90 % 36 68 577
70 % 36 68 627
50 % 36 146 223
40 % 36 146 249
30 % 44 450 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56081
95 % 1 1 39110
90 % 1 1 37261
70 % 36 68 620
50 % 36 142 231
40 % 36 142 260
30 % 36 142 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 322
95 % 36 74 477
90 % 36 74 507
70 % 36 74 551
50 % 36 74 638
40 % 36 74 684
30 % 43 439 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 505
70 % 36 74 548
50 % 36 76 619
40 % 36 76 659
30 % 36 78 648
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 549
90 % 36 68 579
70 % 36 68 630
50 % 36 70 691
40 % 36 70 737
30 % 36 70 740
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2010
95 % 36 68 546
90 % 36 68 575
70 % 36 68 626
50 % 36 68 715
40 % 36 70 734
30 % 36 71 723
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 551
90 % 36 68 581
70 % 36 68 633
50 % 36 70 692
40 % 36 70 738
30 % 36 71 726
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 380
95 % 36 68 544
90 % 36 68 573
70 % 36 68 624
50 % 36 68 713
40 % 36 68 751
30 % 36 145 262
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 328
95 % 36 74 482
90 % 36 74 513
70 % 36 74 558
50 % 36 76 622
40 % 36 78 637
30 % 43 376 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 511
70 % 36 74 556
50 % 36 150 218
40 % 36 150 240
30 % 36 150 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 349
95 % 34 70 521
90 % 34 70 549
70 % 34 70 601
50 % 34 70 693
40 % 34 70 739
30 % 34 70 741
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 329
95 % 36 74 483
90 % 36 74 514
70 % 36 74 559
50 % 36 74 643
40 % 36 74 689
30 % 36 74 692
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 68 714
40 % 36 70 732
30 % 36 71 722
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 553
90 % 36 68 583
70 % 36 68 635
50 % 36 68 719
40 % 36 68 755
30 % 36 68 759
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59312
95 % 3 5 13235
90 % 3 5 12995
70 % 3 5 12228
50 % 3 5 10936
40 % 3 5 9948
30 % 3 5 8649
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65429
95 % 1 1 45371
90 % 1 1 43207
70 % 3 21 2661
50 % 7 30 1792
40 % 7 99 369
30 % 26 122 316
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 372
95 % 36 68 554
90 % 36 68 584
70 % 36 68 636
50 % 36 69 703
40 % 36 69 746
30 % 36 69 752
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66792
95 % 36 68 556
90 % 36 68 586
70 % 36 68 637
50 % 36 143 226
40 % 36 143 254
30 % 36 143 264
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 552
90 % 36 68 582
70 % 36 68 634
50 % 36 68 718
40 % 36 68 754
30 % 36 140 274
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 543
90 % 36 68 572
70 % 36 68 623
50 % 36 68 712
40 % 36 145 251
30 % 44 445 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1987
95 % 36 68 541
90 % 36 68 569
70 % 36 68 619
50 % 36 141 230
40 % 36 143 253
30 % 36 143 263
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49593
95 % 36 74 468
90 % 36 74 498
70 % 36 74 544
50 % 36 74 632
40 % 36 150 238
30 % 36 150 251
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9274
95 % 36 74 471
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 36 76 658
30 % 36 77 658
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 549
50 % 36 74 636
40 % 37 151 237
30 % 37 151 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2019
95 % 3 21 2614
90 % 36 68 578
70 % 36 68 628
50 % 51 103 297
40 % 58 117 270
30 % 58 119 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58257
95 % 1 1 40327
90 % 1 7 9427
70 % 3 27 1962
50 % 36 74 637
40 % 36 79 629
30 % 36 79 641
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 478
90 % 36 74 509
70 % 36 74 554
50 % 36 74 641
40 % 37 77 649
30 % 37 78 651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 15 M 50S ribosomal protein L15e 2238
2 1VQO 15 M 50S Ribosomal Protein L15E 2238
3 1VQ8 15 M 50S Ribosomal Protein L15E 2238
4 1S72 15 M 50S ribosomal protein L15e 2238
5 1JJ2 14 L RIBOSOMAL PROTEIN L15E 2238
6 1YHQ 15 M 50S Ribosomal Protein L15E 2238
7 1VQP 15 M 50S Ribosomal Protein L15E 2238
8 1VQM 15 M 50S Ribosomal Protein L15E 2238
9 3CC2 13 M 50S ribosomal protein L15e 2238
10 1VQL 15 M 50S Ribosomal Protein L15E 2238
11 1VQK 15 M 50S Ribosomal Protein L15E 2238
12 1VQN 16 M 50S Ribosomal Protein L15E 2238
13 1YIJ 15 M 50S Ribosomal Protein L15E 2238
14 1YI2 15 M 50S Ribosomal Protein L15E 2238
15 1VQ9 15 M 50S Ribosomal Protein L15E 2238
16 1VQ7 15 M 50S Ribosomal Protein L15E 2238
17 3CCM 13 M 50S ribosomal protein L15e 2238
18 1VQ5 15 M 50S Ribosomal Protein L15E 2238
19 3CCJ 13 M 50S ribosomal protein L15e 2238
20 3CC7 13 M 50S ribosomal protein L15e 2238
21 1YIT 19 M 50S RIBOSOMAL PROTEIN L15E 2238
22 3CCE 13 M 50S ribosomal protein L15e 2238
23 3G6E 14 M 50S ribosomal protein L15e 2238
24 3CPW 14 L 50S ribosomal protein L15e 2238
25 3CCU 13 M 50S ribosomal protein L15e 2238
26 1VQ6 16 M 50S Ribosomal Protein L15E 2238
27 1M90 15 N RIBOSOMAL PROTEIN L15E 2238
28 3CCL 13 M 50S ribosomal protein L15e 2238
29 1YJW 19 M 50S RIBOSOMAL PROTEIN L15E 2238
30 1YJ9 15 M 50S Ribosomal Protein L15E 2238
31 3CD6 13 M 50S ribosomal protein L15e 2238
32 3CCV 13 M 50S ribosomal protein L15e 2238
33 3CC4 13 M 50S ribosomal protein L15e 2238
34 2OTL 14 M 50S ribosomal protein L15e 2238
35 3G71 14 M 50S ribosomal protein L15e 2238
36 1FFK 11 I RIBOSOMAL PROTEIN L15E 2238
37 1VQ4 15 M 50S Ribosomal Protein L15E 2238
38 1YJN 15 M 50S Ribosomal Protein L15E 2238
39 3CMA 13 M 50S ribosomal protein L15e 2238
40 3CCS 13 M 50S ribosomal protein L15e 2238
41 3CCQ 13 M 50S ribosomal protein L15e 2238
42 3I56 13 M 50S ribosomal protein L15e 2238
43 3CCR 13 M 50S ribosomal protein L15e 2238
44 2OTJ 14 M 50S ribosomal protein L15e 2238
45 4V88 51 BN, DN 60S ribosomal protein L15-A 4932
46 1KQS 16 L RIBOSOMAL PROTEIN L15E 2238
47 3OW2 14 L 50S ribosomal protein L15e 2238
48 4U4R 51 M5, m5 60S ribosomal protein L15-A 4932
49 3CXC 15 L RIBOSOMAL PROTEIN L15E 2238
50 1QVG 15 L L15 Ribosomal Protein 2238
51 3CME 13 M 50S ribosomal protein L15e 2238
52 2QEX 14 M 50S ribosomal protein L15e 2238
53 4U3U 51 M5, m5 60S ribosomal protein L15-A 4932
54 1KC8 14 N RIBOSOMAL PROTEIN L15E 2238
55 4U3M 51 M5, m5 60S ribosomal protein L15-A 4932
56 1N8R 14 N 50S ribosomal protein L15E 2238
57 4U3N 51 M5, m5 60S ribosomal protein L15-A 4932
58 1Q81 15 N L15 Ribosomal Protein 2238
59 1Q82 15 N L15 Ribosomal Protein 2238
60 1QVF 15 L L15 Ribosomal Protein 2238
61 4U52 51 M5, m5 60S ribosomal protein L15-A 4932
62 4U4Q 51 M5, m5 60S ribosomal protein L15-A 4932
63 1NJI 14 N 50S ribosomal protein L15E 2238
64 4U6F 51 M5, m5 60S ribosomal protein L15-A 4932
65 4U4U 51 M5, m5 60S ribosomal protein L15-A 4932
66 1K73 14 N RIBOSOMAL PROTEIN L15E 2238
67 4U4Z 51 M5, m5 60S ribosomal protein L15-A 4932
68 4U4Y 51 M5, m5 60S ribosomal protein L15-A 4932
69 4U4N 51 M5, m5 60S ribosomal protein L15-A 4932
70 4U55 51 M5, m5 60S ribosomal protein L15-A 4932
71 1K9M 14 N RIBOSOMAL PROTEIN L15E 2238
72 1KD1 14 N RIBOSOMAL PROTEIN L15E 2238
73 5DAT 51 M5 60S ribosomal protein L15-A 4932
74 5DAT 82 m5 60S ribosomal protein L15-A 4932
75 3I55 14 M 50S ribosomal protein L15e 2238
76 5I4L 51 M5, m5 60S ribosomal protein L15-A 4932
77 4U51 51 M5, m5 60S ribosomal protein L15-A 4932
78 1K8A 14 N RIBOSOMAL PROTEIN L15E 2238
79 4U53 51 M5, m5 60S ribosomal protein L15-A 4932
80 1Q86 15 N L15 Ribosomal Protein 2238
81 4U50 51 M5, m5 60S ribosomal protein L15-A 4932
82 1M1K 14 N RIBOSOMAL PROTEIN L15E 2238
83 3G4S 14 M 50S ribosomal protein L15e 2238
84 1W2B 17 L 50S RIBOSOMAL PROTEIN L15E 2238
85 4U56 51 M5, m5 60S ribosomal protein L15-A 4932
86 2QA4 15 M 50S ribosomal protein L15e 2238
87 1Q7Y 15 N L15 Ribosomal Protein 2238
88 5FCJ 51 M5, m5 60S ribosomal protein L15-A 4932
89 4U4O 51 M5, m5 60S ribosomal protein L15-A 4932
90 4V8P 33 BL, CL, EL, GL RIBOSOMAL PROTEIN L15 5911
91 5FCI 51 M5, m5 60S ribosomal protein L15-A 4932
92 5DC3 51 M5, m5 60S ribosomal protein L15-A 4932
93 4V7R 44 BO, DO 60S ribosomal protein L15-A 4932
94 5IT7 16 NN Ribosomal protein L15 28985
95 3JCT 14 N 60S ribosomal protein L15-A 4932
96 3JCS 21 M ribosomal protein L15e 5661
97 5GAK 37 P 60S ribosomal protein L15-A 4932
98 5FL8 14 N 60S ribosomal protein L15-A 4932
99 5APN 16 N 60S ribosomal protein L15-A 4932
100 5APO 16 N 60S ribosomal protein L15-A 4932
101 3JBN 51 AP 60S ribosomal protein eL15 5833
102 3JBO 54 AP 60S ribosomal protein eL15 5833
103 3JBP 51 AP 60S ribosomal protein eL15 5833
104 3JAN 8 N Ribosomal protein eL15 SEE REMARK 999 9986
105 3JAJ 8 N Ribosomal protein eL15 SEE REMARK 999 9986
106 3JAG 13 N eL15 9986
107 3JAH 13 N eL15 9986
108 3JAI 13 N eL15 9986
109 4UG0 16 LN 60S RIBOSOMAL PROTEIN L15 9606
110 5AJ0 16 AN 60S ribosomal protein L15 9606
111 3J92 13 N eL15 9986
112 4D67 13 N 60S RIBOSOMAL PROTEIN L15 9986
113 4D5Y 13 N 60S RIBOSOMAL PROTEIN EL15 9986
114 4V3P 42 LP Ribosomal protein L15 4565
115 3J7O 16 N Ribosomal protein eL15 9823
116 3J7P 17 N Ribosomal protein eL15 9823
117 3J7Q 16 N Ribosomal protein eL15 9823
118 3J7R 16 N Ribosomal protein eL15 9823
119 4UJC 19 BN 60S RIBOSOMAL PROTEIN L15 9986
120 4UJD 16 AN 60S RIBOSOMAL PROTEIN L15 9986
121 3J79 16 P 60S ribosomal protein eL15 5833
122 3J77 15 65 60S ribosomal protein L15 4932
123 3J78 15 65 60S ribosomal protein L15 4932
124 3J6X 17 55 60S ribosomal protein L15 4932
125 3J6Y 17 55 60S ribosomal protein L15 4932
126 4UJE 50 CN 60S RIBOSOMAL PROTEIN L15 9986
127 4V91 16 N EL15 RIBOSOMAL PROTEIN EL15 28985
128 4V7F 18 O 60S ribosomal protein L15 4932
129 4V7E 45 CN 60S ribosomal protein L15E 4565
130 4V8Y 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932
131 4V8Z 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932
132 4V4N 60 AM 50S ribosomal protein L15E SEE REMARK 999 2190
133 4V6W 46 CN 60S ribosomal protein L15 7227
134 4V6X 46 CN 60S ribosomal protein L15 9606
135 4V8M 50 BQ RIBOSOMAL PROTEIN L15 185431
136 4V6U 59 BM 50S ribosomal protein L15e 2261
137 4V8T 14 N 60S RIBOSOMAL PROTEIN L15-A 4932
138 4ADX 23 M RPL15E 145262
139 4V6I 43 BP 60S ribosomal protein rpL15 (L15e) 4932
140 4V7H 36 BL 60S ribosomal protein L15(A) 5541
141 4V5Z 65 Bm 60S Ribosomal protein L15e 9612
142 4V4B 31 BL 60S ribosomal protein L15-A 4932