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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 241 Members. Sequence cutoff: 50% Cluster size: 116 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 15 M 50S ribosomal protein L15e 272569  
2 1VQO 15 M 50S Ribosomal Protein L15E 2238  
3 1VQ8 15 M 50S Ribosomal Protein L15E 2238  
4 1S72 15 M 50S ribosomal protein L15e 2238  
5 1JJ2 14 L RIBOSOMAL PROTEIN L15E 2238  
6 1YHQ 15 M 50S Ribosomal Protein L15E 2238  
7 1VQP 15 M 50S Ribosomal Protein L15E 2238  
8 1VQM 15 M 50S Ribosomal Protein L15E 2238  
9 3CC2 13 M 50S ribosomal protein L15e 2238  
10 1VQL 15 M 50S Ribosomal Protein L15E 2238  
11 1VQK 15 M 50S Ribosomal Protein L15E 2238  
12 1VQN 16 M 50S Ribosomal Protein L15E 2238  
13 1YIJ 15 M 50S Ribosomal Protein L15E 2238  
14 1YI2 15 M 50S Ribosomal Protein L15E 2238  
15 1VQ9 15 M 50S Ribosomal Protein L15E 2238  
16 1VQ7 15 M 50S Ribosomal Protein L15E 2238  
17 3CCM 13 M 50S ribosomal protein L15e 272569  
18 1VQ5 15 M 50S Ribosomal Protein L15E 2238  
19 3CCJ 13 M 50S ribosomal protein L15e 272569  
20 3CC7 13 M 50S ribosomal protein L15e 2238  
21 1YIT 19 M 50S RIBOSOMAL PROTEIN L15E 2238  
22 3CCE 13 M 50S ribosomal protein L15e 272569  
23 3G6E 14 M 50S ribosomal protein L15e 2238  
24 3CPW 14 L 50S ribosomal protein L15e 272569  
25 3CCU 13 M 50S ribosomal protein L15e 272569  
26 1VQ6 16 M 50S Ribosomal Protein L15E 2238  
27 1M90 15 N RIBOSOMAL PROTEIN L15E 2238  
28 3CCL 13 M 50S ribosomal protein L15e 272569  
29 1YJW 19 M 50S RIBOSOMAL PROTEIN L15E 2238  
30 1YJ9 15 M 50S Ribosomal Protein L15E 2238  
31 3CD6 13 M 50S ribosomal protein L15e 272569  
32 3CCV 13 M 50S ribosomal protein L15e 272569  
33 3CC4 13 M 50S ribosomal protein L15e 272569  
34 2OTL 14 M 50S ribosomal protein L15e 2238  
35 3G71 14 M 50S ribosomal protein L15e 2238  
36 1FFK 11 I RIBOSOMAL PROTEIN L15E 2238  
37 1VQ4 15 M 50S Ribosomal Protein L15E 2238  
38 1YJN 15 M 50S Ribosomal Protein L15E 2238  
39 3CMA 13 M 50S ribosomal protein L15e 2238  
40 3CCS 13 M 50S ribosomal protein L15e 272569  
41 3CCQ 13 M 50S ribosomal protein L15e 272569  
42 3I56 13 M 50S ribosomal protein L15e 2238  
43 3CCR 13 M 50S ribosomal protein L15e 272569  
44 2OTJ 14 M 50S ribosomal protein L15e 2238  
45 4V88 51 BN, DN 60S ribosomal protein L15-A 559292  
46 1KQS 16 L RIBOSOMAL PROTEIN L15E 2238  
47 3OW2 14 L 50S ribosomal protein L15e 2238  
48 4U4R 51 M5, m5 60S ribosomal protein L15-A 559292  
49 3CXC 15 L RIBOSOMAL PROTEIN L15E 2238  
50 1QVG 15 L L15 Ribosomal Protein 2238  
51 3CME 13 M 50S ribosomal protein L15e 2238  
52 2QEX 14 M 50S ribosomal protein L15e 2238  
53 4U3U 51 M5, m5 60S ribosomal protein L15-A 559292  
54 1KC8 14 N RIBOSOMAL PROTEIN L15E 2238  
55 4U3M 51 M5, m5 60S ribosomal protein L15-A 559292  
56 1N8R 14 N 50S ribosomal protein L15E 2238  
57 4U3N 51 M5, m5 60S ribosomal protein L15-A 559292  
58 1Q81 15 N L15 Ribosomal Protein 2238  
59 1Q82 15 N L15 Ribosomal Protein 2238  
60 1QVF 15 L L15 Ribosomal Protein 2238  
61 4U52 51 M5, m5 60S ribosomal protein L15-A 559292  
62 4U4Q 51 M5, m5 60S ribosomal protein L15-A 559292  
63 1NJI 14 N 50S ribosomal protein L15E 2238  
64 4U6F 51 M5, m5 60S ribosomal protein L15-A 559292  
65 4U4U 51 M5, m5 60S ribosomal protein L15-A 559292  
66 1K73 14 N RIBOSOMAL PROTEIN L15E 2238  
67 4U4Z 51 M5, m5 60S ribosomal protein L15-A 559292  
68 4U4Y 51 M5, m5 60S ribosomal protein L15-A 559292  
69 4U4N 51 M5, m5 60S ribosomal protein L15-A 559292  
70 4U55 51 M5, m5 60S ribosomal protein L15-A 559292  
71 1K9M 14 N RIBOSOMAL PROTEIN L15E 2238  
72 1KD1 14 N RIBOSOMAL PROTEIN L15E 2238  
73 3I55 14 M 50S ribosomal protein L15e 2238  
74 4U51 51 M5, m5 60S ribosomal protein L15-A 559292  
75 1K8A 14 N RIBOSOMAL PROTEIN L15E 2238  
76 4U53 51 M5, m5 60S ribosomal protein L15-A 559292  
77 1Q86 15 N L15 Ribosomal Protein 2238  
78 4U50 51 M5, m5 60S ribosomal protein L15-A 559292  
79 1M1K 14 N RIBOSOMAL PROTEIN L15E 2238  
80 3G4S 14 M 50S ribosomal protein L15e 2238  
81 1W2B 17 L 50S RIBOSOMAL PROTEIN L15E 2238  
82 4U56 51 M5, m5 60S ribosomal protein L15-A 559292  
83 2QA4 15 M 50S ribosomal protein L15e 2238  
84 1Q7Y 15 N L15 Ribosomal Protein 2238  
85 4U4O 51 M5, m5 60S ribosomal protein L15-A 559292  
86 4V8P 33 BL, CL, EL, GL RIBOSOMAL PROTEIN L15 5911  
87 4V7R 44 BO, DO 60S ribosomal protein L15-A 4932  
88 3J92 13 N eL15 9986  
89 3J7O 16 N Ribosomal protein eL15 9823  
90 3J7P 17 N Ribosomal protein eL15 9823  
91 3J7Q 16 N Ribosomal protein eL15 9823  
92 3J7R 16 N Ribosomal protein eL15 9823  
93 4UJC 19 BN 60S RIBOSOMAL PROTEIN L15 9986  
94 4UJD 16 AN 60S RIBOSOMAL PROTEIN L15 9986  
95 3J79 16 P 60S ribosomal protein eL15 36329  
96 3J77 15 65 60S ribosomal protein L15 4932  
97 3J78 15 65 60S ribosomal protein L15 4932  
98 3J6X 17 55 60S ribosomal protein L15 580240  
99 3J6Y 17 55 60S ribosomal protein L15 580240  
100 4UJE 50 CN 60S RIBOSOMAL PROTEIN L15 9986  
101 4V91 16 N EL15 RIBOSOMAL PROTEIN EL15 28985  
102 4V7F 18 O 60S ribosomal protein L15 4932  
103 4V7E 45 CN 60S ribosomal protein L15E 4565  
104 4V8Y 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932  
105 4V8Z 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932  
106 4V4N 60 AM 50S ribosomal protein L15E SEE REMARK 999 2190  
107 4V6W 46 CN 60S ribosomal protein L15 7227  
108 4V6X 46 CN 60S ribosomal protein L15 9606  
109 4V8M 50 BQ RIBOSOMAL PROTEIN L15 185431  
110 4V6U 59 BM 50S ribosomal protein L15e 186497  
111 4V8T 14 N 60S RIBOSOMAL PROTEIN L15-A 559292  
112 4ADX 23 M RPL15E 187420  
113 4V6I 43 BP 60S ribosomal protein rpL15 (L15e) 4932  
114 4V7H 36 BL 60S ribosomal protein L15(A) 5541  
115 4V5Z 65 Bm 60S Ribosomal protein L15e 9615  
116 4V4B 31 BL 60S ribosomal protein L15-A 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 632
95% 36 68 463
90% 36 68 486
70% 36 68 522
50% 36 118 235
40% 36 118 264
30% 38 324 46
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48204
95% 1 1 33823
90% 1 1 32338
70% 36 68 515
50% 36 116 241
40% 36 116 272
30% 36 116 293
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 408
90% 36 74 432
70% 36 74 462
50% 36 74 507
40% 36 74 544
30% 37 316 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 406
90% 36 74 430
70% 36 74 460
50% 36 76 486
40% 36 76 520
30% 36 78 511
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 465
90% 36 68 489
70% 36 68 525
50% 36 70 549
40% 36 70 583
30% 36 70 582
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1666
95% 36 68 461
90% 36 68 484
70% 36 68 520
50% 36 68 584
40% 36 70 582
30% 36 71 563
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 467
90% 36 68 491
70% 36 68 527
50% 36 70 552
40% 36 70 587
30% 36 71 565
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 459
90% 36 68 482
70% 36 68 518
50% 36 68 581
40% 36 68 614
30% 36 119 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 411
90% 36 74 435
70% 36 74 466
50% 36 76 488
40% 36 78 503
30% 37 278 69
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 410
90% 36 74 434
70% 36 74 465
50% 36 125 220
40% 36 125 248
30% 36 125 264
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 309
95% 34 70 445
90% 34 70 465
70% 34 70 500
50% 34 70 553
40% 34 70 588
30% 34 70 584
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 412
90% 36 74 436
70% 36 74 467
50% 36 74 510
40% 36 74 546
30% 36 74 542
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 460
90% 36 68 483
70% 36 68 519
50% 36 68 582
40% 36 70 581
30% 36 71 562
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 469
90% 36 68 493
70% 36 68 529
50% 36 68 589
40% 36 68 621
30% 36 68 614
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51158
95% 3 5 11321
90% 3 5 11140
70% 3 5 10526
50% 3 5 9462
40% 3 5 8631
30% 3 5 7566
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56766
95% 1 1 39596
90% 1 1 37864
70% 3 21 2252
50% 7 30 1533
40% 7 74 413
30% 26 97 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 471
90% 36 68 495
70% 36 68 531
50% 36 69 568
40% 36 69 606
30% 36 69 601
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58037
95% 36 68 472
90% 36 68 496
70% 36 68 532
50% 36 118 236
40% 36 118 265
30% 36 118 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 468
90% 36 68 492
70% 36 68 528
50% 36 68 588
40% 36 68 620
30% 36 117 289
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 458
90% 36 68 481
70% 36 68 517
50% 36 68 579
40% 36 117 269
30% 38 319 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1649
95% 35 67 475
90% 35 67 499
70% 35 67 537
50% 35 115 244
40% 35 117 267
30% 35 117 286
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42501
95% 36 74 400
90% 36 74 424
70% 36 74 455
50% 36 74 501
40% 36 122 253
30% 36 122 272
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7765
95% 36 74 404
90% 36 74 428
70% 36 74 459
50% 36 74 504
40% 36 76 519
30% 36 77 516
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 407
90% 36 74 431
70% 36 74 461
50% 36 74 505
40% 36 122 256
30% 36 122 274
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1677
95% 3 21 2199
90% 36 68 488
70% 36 68 524
50% 51 95 299
40% 58 105 287
30% 58 107 307
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50178
95% 1 1 34929
90% 1 7 8043
70% 3 27 1661
50% 36 74 506
40% 36 78 500
30% 36 78 512
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 409
90% 36 74 433
70% 36 74 463
50% 36 74 508
40% 37 77 511
30% 37 78 513
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.