Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 786
95 % 36 68 607
90 % 36 68 641
70 % 36 68 681
50 % 36 163 208
40 % 36 163 229
30 % 44 479 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56903
95 % 1 1 39657
90 % 1 1 37770
70 % 36 68 675
50 % 36 159 215
40 % 36 159 237
30 % 36 159 249
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 344
95 % 36 74 508
90 % 36 74 542
70 % 36 74 580
50 % 36 74 654
40 % 36 74 700
30 % 43 468 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 342
95 % 36 74 506
90 % 36 74 538
70 % 36 74 576
50 % 36 76 634
40 % 36 76 678
30 % 36 79 657
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 418
95 % 36 68 609
90 % 36 68 643
70 % 36 68 683
50 % 36 70 705
40 % 36 70 746
30 % 36 70 750
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2083
95 % 36 68 605
90 % 36 68 640
70 % 36 68 680
50 % 36 68 733
40 % 36 72 717
30 % 36 72 719
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 420
95 % 36 68 612
90 % 36 68 645
70 % 36 68 686
50 % 36 70 707
40 % 36 70 748
30 % 36 71 735
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 431
95 % 36 68 603
90 % 36 68 638
70 % 36 68 678
50 % 36 68 731
40 % 36 68 765
30 % 36 162 241
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 351
95 % 36 74 514
90 % 36 74 551
70 % 36 74 589
50 % 36 76 636
40 % 36 78 657
30 % 43 388 57
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 349
95 % 36 74 512
90 % 36 74 548
70 % 36 74 588
50 % 36 167 203
40 % 36 167 224
30 % 36 167 232
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 397
95 % 34 70 579
90 % 34 70 617
70 % 34 70 654
50 % 34 70 708
40 % 34 70 750
30 % 34 70 753
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 352
95 % 36 74 515
90 % 36 74 552
70 % 36 74 590
50 % 36 74 659
40 % 36 74 703
30 % 36 74 702
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 412
95 % 36 68 604
90 % 36 68 639
70 % 36 68 679
50 % 36 68 732
40 % 36 70 742
30 % 36 71 733
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 422
95 % 36 68 614
90 % 36 68 647
70 % 36 68 688
50 % 36 68 738
40 % 36 68 769
30 % 36 68 773
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60177
95 % 3 5 13444
90 % 3 5 13198
70 % 3 5 12404
50 % 3 5 11089
40 % 3 5 10075
30 % 3 5 8755
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66369
95 % 1 1 46000
90 % 1 1 43778
70 % 3 21 2737
50 % 7 30 1830
40 % 7 116 322
30 % 26 139 281
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 423
95 % 36 68 615
90 % 36 68 648
70 % 36 68 691
50 % 36 69 719
40 % 36 69 758
30 % 36 69 764
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67745
95 % 36 68 616
90 % 36 68 649
70 % 36 68 692
50 % 36 160 213
40 % 36 160 235
30 % 36 160 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 421
95 % 36 68 613
90 % 36 68 646
70 % 36 68 687
50 % 36 68 737
40 % 36 68 768
30 % 36 156 253
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 411
95 % 36 68 602
90 % 36 68 637
70 % 36 68 677
50 % 36 68 730
40 % 36 161 230
30 % 44 473 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2063
95 % 36 68 598
90 % 36 68 635
70 % 36 68 674
50 % 36 158 214
40 % 36 160 233
30 % 36 160 245
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50316
95 % 36 74 501
90 % 36 74 533
70 % 36 74 569
50 % 36 74 647
40 % 36 167 222
30 % 36 167 230
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9480
95 % 36 74 504
90 % 36 74 535
70 % 36 74 575
50 % 36 74 650
40 % 36 76 677
30 % 36 77 675
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 343
95 % 36 74 507
90 % 36 74 540
70 % 36 74 578
50 % 36 74 652
40 % 37 167 223
30 % 37 167 231
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2091
95 % 3 21 2709
90 % 36 68 642
70 % 36 68 682
50 % 51 104 303
40 % 58 118 276
30 % 58 120 284
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59113
95 % 1 1 40895
90 % 1 7 9594
70 % 3 27 2023
50 % 36 74 653
40 % 36 79 645
30 % 36 79 660
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 345
95 % 36 74 509
90 % 36 74 545
70 % 36 74 584
50 % 36 74 657
40 % 37 77 667
30 % 37 78 667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 15 M 50S ribosomal protein L15e 2238
2 1VQO 15 M 50S Ribosomal Protein L15E 2238
3 1VQ8 15 M 50S Ribosomal Protein L15E 2238
4 1S72 15 M 50S ribosomal protein L15e 2238
5 1JJ2 14 L RIBOSOMAL PROTEIN L15E 2238
6 1YHQ 15 M 50S Ribosomal Protein L15E 2238
7 1VQP 15 M 50S Ribosomal Protein L15E 2238
8 1VQM 15 M 50S Ribosomal Protein L15E 2238
9 3CC2 13 M 50S ribosomal protein L15e 2238
10 1VQL 15 M 50S Ribosomal Protein L15E 2238
11 1VQK 15 M 50S Ribosomal Protein L15E 2238
12 1VQN 16 M 50S Ribosomal Protein L15E 2238
13 1YIJ 15 M 50S Ribosomal Protein L15E 2238
14 1YI2 15 M 50S Ribosomal Protein L15E 2238
15 1VQ9 15 M 50S Ribosomal Protein L15E 2238
16 1VQ7 15 M 50S Ribosomal Protein L15E 2238
17 3CCM 13 M 50S ribosomal protein L15e 2238
18 1VQ5 15 M 50S Ribosomal Protein L15E 2238
19 3CCJ 13 M 50S ribosomal protein L15e 2238
20 3CC7 13 M 50S ribosomal protein L15e 2238
21 1YIT 19 M 50S RIBOSOMAL PROTEIN L15E 2238
22 3CCE 13 M 50S ribosomal protein L15e 2238
23 3G6E 14 M 50S ribosomal protein L15e 2238
24 3CPW 14 L 50S ribosomal protein L15e 2238
25 3CCU 13 M 50S ribosomal protein L15e 2238
26 1VQ6 16 M 50S Ribosomal Protein L15E 2238
27 1M90 15 N RIBOSOMAL PROTEIN L15E 2238
28 3CCL 13 M 50S ribosomal protein L15e 2238
29 1YJW 19 M 50S RIBOSOMAL PROTEIN L15E 2238
30 1YJ9 15 M 50S Ribosomal Protein L15E 2238
31 3CD6 13 M 50S ribosomal protein L15e 2238
32 3CCV 13 M 50S ribosomal protein L15e 2238
33 3CC4 13 M 50S ribosomal protein L15e 2238
34 2OTL 14 M 50S ribosomal protein L15e 2238
35 3G71 14 M 50S ribosomal protein L15e 2238
36 1FFK 11 I RIBOSOMAL PROTEIN L15E 2238
37 1VQ4 15 M 50S Ribosomal Protein L15E 2238
38 1YJN 15 M 50S Ribosomal Protein L15E 2238
39 3CMA 13 M 50S ribosomal protein L15e 2238
40 3CCS 13 M 50S ribosomal protein L15e 2238
41 3CCQ 13 M 50S ribosomal protein L15e 2238
42 3I56 13 M 50S ribosomal protein L15e 2238
43 3CCR 13 M 50S ribosomal protein L15e 2238
44 2OTJ 14 M 50S ribosomal protein L15e 2238
45 4V88 51 BN, DN 60S ribosomal protein L15-A 4932
46 1KQS 16 L RIBOSOMAL PROTEIN L15E 2238
47 3OW2 14 L 50S ribosomal protein L15e 2238
48 4U4R 51 M5, m5 60S ribosomal protein L15-A 4932
49 3CXC 15 L RIBOSOMAL PROTEIN L15E 2238
50 1QVG 15 L L15 Ribosomal Protein 2238
51 3CME 13 M 50S ribosomal protein L15e 2238
52 2QEX 14 M 50S ribosomal protein L15e 2238
53 4U3U 51 M5, m5 60S ribosomal protein L15-A 4932
54 1KC8 14 N RIBOSOMAL PROTEIN L15E 2238
55 4U3M 51 M5, m5 60S ribosomal protein L15-A 4932
56 1N8R 14 N 50S ribosomal protein L15E 2238
57 4U3N 51 M5, m5 60S ribosomal protein L15-A 4932
58 1Q81 15 N L15 Ribosomal Protein 2238
59 1Q82 15 N L15 Ribosomal Protein 2238
60 1QVF 15 L L15 Ribosomal Protein 2238
61 4U52 51 M5, m5 60S ribosomal protein L15-A 4932
62 4U4Q 51 M5, m5 60S ribosomal protein L15-A 4932
63 1NJI 14 N 50S ribosomal protein L15E 2238
64 4U6F 51 M5, m5 60S ribosomal protein L15-A 4932
65 4U4U 51 M5, m5 60S ribosomal protein L15-A 4932
66 1K73 14 N RIBOSOMAL PROTEIN L15E 2238
67 4U4Z 51 M5, m5 60S ribosomal protein L15-A 4932
68 4U4Y 51 M5, m5 60S ribosomal protein L15-A 4932
69 4U4N 51 M5, m5 60S ribosomal protein L15-A 4932
70 4U55 51 M5, m5 60S ribosomal protein L15-A 4932
71 1K9M 14 N RIBOSOMAL PROTEIN L15E 2238
72 1KD1 14 N RIBOSOMAL PROTEIN L15E 2238
73 5DAT 51 M5 60S ribosomal protein L15-A 4932
74 5DAT 82 m5 60S ribosomal protein L15-A 4932
75 3I55 14 M 50S ribosomal protein L15e 2238
76 5I4L 51 M5, m5 60S ribosomal protein L15-A 4932
77 4U51 51 M5, m5 60S ribosomal protein L15-A 4932
78 1K8A 14 N RIBOSOMAL PROTEIN L15E 2238
79 4U53 51 M5, m5 60S ribosomal protein L15-A 4932
80 1Q86 15 N L15 Ribosomal Protein 2238
81 4U50 51 M5, m5 60S ribosomal protein L15-A 4932
82 5LYB 51 M5, m5 60S ribosomal protein L15-A 4932
83 1M1K 14 N RIBOSOMAL PROTEIN L15E 2238
84 3G4S 14 M 50S ribosomal protein L15e 2238
85 1W2B 17 L 50S RIBOSOMAL PROTEIN L15E 2238
86 4U56 51 M5, m5 60S ribosomal protein L15-A 4932
87 2QA4 15 M 50S ribosomal protein L15e 2238
88 5TGA 51 M5, m5 60S ribosomal protein L15-A 4932
89 1Q7Y 15 N L15 Ribosomal Protein 2238
90 5FCJ 51 M5, m5 60S ribosomal protein L15-A 4932
91 4U4O 51 M5, m5 60S ribosomal protein L15-A 4932
92 4V8P 33 BL, CL, EL, GL RIBOSOMAL PROTEIN L15 5911
93 5FCI 51 M5, m5 60S ribosomal protein L15-A 4932
94 5DC3 51 M5, m5 60S ribosomal protein L15-A 4932
95 4V7R 44 BO, DO 60S ribosomal protein L15-A 4932
96 5LZS 13 N Ribosomal protein L15 9986
97 5LZT 13 N eL15 9986
98 5LZU 13 N Ribosomal protein L15 9986
99 5LZV 13 N eL15 9986
100 5LZW 13 N eL15 9986
101 5LZX 13 N Ribosomal protein L15 9986
102 5LZY 13 N Ribosomal protein L15 9986
103 5LZZ 13 N Ribosomal protein L15 9986
104 5T5H 14 Q Ribosomal protein L15 5693
105 5JUO 19 S eL15 (yeast L15) 4932
106 5JUP 19 S eL15 (yeast L15) 4932
107 5JUS 19 S eL15 (yeast L15) 4932
108 5JUT 19 S eL15 (yeast L15) 4932
109 5JUU 19 S eL15 (yeast L15) 4932
110 5JCS 27 N 60S ribosomal protein L15-A 4932
111 5IT7 16 NN Ribosomal protein L15 28985
112 3JCT 14 N 60S ribosomal protein L15-A 4932
113 3JCS 21 M ribosomal protein L15e 5661
114 5GAK 37 P 60S ribosomal protein L15-A 4932
115 5FL8 14 N 60S ribosomal protein L15-A 4932
116 5APN 16 N 60S ribosomal protein L15-A 4932
117 5APO 16 N 60S ribosomal protein L15-A 4932
118 3JBN 51 AP 60S ribosomal protein eL15 5833
119 3JBO 54 AP 60S ribosomal protein eL15 5833
120 3JBP 51 AP 60S ribosomal protein eL15 5833
121 3JAN 8 N Ribosomal protein eL15 SEE REMARK 999 9986
122 3JAJ 8 N Ribosomal protein eL15 SEE REMARK 999 9986
123 3JAG 13 N eL15 9986
124 3JAH 13 N eL15 9986
125 3JAI 13 N eL15 9986
126 4UG0 16 LN 60S RIBOSOMAL PROTEIN L15 9606
127 5AJ0 16 AN 60S ribosomal protein L15 9606
128 3J92 13 N eL15 9986
129 4D67 13 N 60S RIBOSOMAL PROTEIN L15 9986
130 4D5Y 13 N 60S RIBOSOMAL PROTEIN EL15 9986
131 4V3P 42 LP Ribosomal protein L15 4565
132 3J7O 16 N Ribosomal protein eL15 9823
133 3J7P 17 N Ribosomal protein eL15 9823
134 3J7Q 16 N Ribosomal protein eL15 9823
135 3J7R 16 N Ribosomal protein eL15 9823
136 4UJC 19 BN 60S RIBOSOMAL PROTEIN L15 9986
137 4UJD 16 AN 60S RIBOSOMAL PROTEIN L15 9986
138 3J79 16 P 60S ribosomal protein eL15 5833
139 3J77 15 65 60S ribosomal protein L15 4932
140 3J78 15 65 60S ribosomal protein L15 4932
141 3J6X 17 55 60S ribosomal protein L15 4932
142 3J6Y 17 55 60S ribosomal protein L15 4932
143 4UJE 50 CN 60S RIBOSOMAL PROTEIN L15 9986
144 4V91 16 N EL15 RIBOSOMAL PROTEIN EL15 28985
145 4V7F 18 O 60S ribosomal protein L15 4932
146 4V7E 45 CN 60S ribosomal protein L15E 4565
147 4V8Y 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932
148 4V8Z 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932
149 4V4N 60 AM 50S ribosomal protein L15E SEE REMARK 999 2190
150 4V6W 46 CN 60S ribosomal protein L15 7227
151 4V6X 46 CN 60S ribosomal protein L15 9606
152 4V8M 50 BQ RIBOSOMAL PROTEIN L15 185431
153 4V6U 59 BM 50S ribosomal protein L15e 2261
154 4V8T 14 N 60S RIBOSOMAL PROTEIN L15-A 4932
155 4ADX 23 M RPL15E 145262
156 4V6I 43 BP 60S ribosomal protein rpL15 (L15e) 4932
157 4V7H 36 BL 60S ribosomal protein L15(A) 5541
158 4V5Z 65 Bm 60S Ribosomal protein L15e 9612
159 4V4B 31 BL 60S ribosomal protein L15-A 4932