Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 754
95 % 36 68 537
90 % 36 68 564
70 % 36 68 615
50 % 36 145 219
40 % 36 145 247
30 % 44 439 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55066
95 % 1 1 38429
90 % 1 1 36618
70 % 36 68 609
50 % 36 140 231
40 % 36 140 259
30 % 36 140 269
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 74 631
40 % 36 74 674
30 % 43 428 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 468
90 % 36 74 496
70 % 36 74 540
50 % 36 76 609
40 % 36 76 652
30 % 36 78 637
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 361
95 % 36 68 538
90 % 36 68 566
70 % 36 68 617
50 % 36 70 678
40 % 36 70 721
30 % 36 70 727
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1967
95 % 36 68 536
90 % 36 68 563
70 % 36 68 614
50 % 36 68 706
40 % 36 70 719
30 % 36 71 710
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 539
90 % 36 68 568
70 % 36 68 619
50 % 36 70 680
40 % 36 70 723
30 % 36 71 713
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 371
95 % 36 68 534
90 % 36 68 561
70 % 36 68 612
50 % 36 68 703
40 % 36 68 740
30 % 36 144 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 476
90 % 36 74 505
70 % 36 74 551
50 % 36 76 611
40 % 36 78 628
30 % 43 366 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 474
90 % 36 74 503
70 % 36 74 549
50 % 36 149 215
40 % 36 149 240
30 % 36 149 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 345
95 % 34 70 514
90 % 34 70 540
70 % 34 70 590
50 % 34 70 681
40 % 34 70 724
30 % 34 70 728
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 477
90 % 36 74 506
70 % 36 74 552
50 % 36 74 637
40 % 36 74 679
30 % 36 74 677
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 535
90 % 36 68 562
70 % 36 68 613
50 % 36 68 704
40 % 36 70 718
30 % 36 71 709
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 541
90 % 36 68 570
70 % 36 68 621
50 % 36 68 708
40 % 36 68 744
30 % 36 68 747
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58262
95 % 3 5 12992
90 % 3 5 12753
70 % 3 5 12001
50 % 3 5 10746
40 % 3 5 9787
30 % 3 5 8520
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64321
95 % 1 1 44627
90 % 1 1 42509
70 % 3 21 2614
50 % 7 30 1756
40 % 7 98 361
30 % 26 121 312
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 365
95 % 36 68 542
90 % 36 68 571
70 % 36 68 622
50 % 36 69 694
40 % 36 69 735
30 % 36 69 741
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65673
95 % 36 68 544
90 % 36 68 572
70 % 36 68 623
50 % 36 142 226
40 % 36 142 256
30 % 36 142 263
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 540
90 % 36 68 569
70 % 36 68 620
50 % 36 68 707
40 % 36 68 743
30 % 36 139 271
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 533
90 % 36 68 560
70 % 36 68 611
50 % 36 68 702
40 % 36 144 248
30 % 44 434 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1945
95 % 36 68 531
90 % 36 68 558
70 % 36 68 608
50 % 36 140 230
40 % 36 142 255
30 % 36 142 261
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48689
95 % 36 74 461
90 % 36 74 490
70 % 36 74 536
50 % 36 74 622
40 % 36 149 235
30 % 36 149 247
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9065
95 % 36 74 464
90 % 36 74 493
70 % 36 74 539
50 % 36 74 625
40 % 36 76 651
30 % 36 77 643
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 470
90 % 36 74 498
70 % 36 74 542
50 % 36 74 629
40 % 37 150 233
30 % 37 150 246
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1976
95 % 3 21 2571
90 % 36 68 565
70 % 36 68 616
50 % 51 97 347
40 % 58 111 309
30 % 58 113 323
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57223
95 % 1 1 39634
90 % 1 7 9235
70 % 3 27 1917
50 % 36 74 630
40 % 36 79 615
30 % 36 79 625
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 472
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 37 77 640
30 % 37 78 640

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 15 M 50S ribosomal protein L15e 2238
2 1VQO 15 M 50S Ribosomal Protein L15E 2238
3 1VQ8 15 M 50S Ribosomal Protein L15E 2238
4 1S72 15 M 50S ribosomal protein L15e 2238
5 1JJ2 14 L RIBOSOMAL PROTEIN L15E 2238
6 1YHQ 15 M 50S Ribosomal Protein L15E 2238
7 1VQP 15 M 50S Ribosomal Protein L15E 2238
8 1VQM 15 M 50S Ribosomal Protein L15E 2238
9 3CC2 13 M 50S ribosomal protein L15e 2238
10 1VQL 15 M 50S Ribosomal Protein L15E 2238
11 1VQK 15 M 50S Ribosomal Protein L15E 2238
12 1VQN 16 M 50S Ribosomal Protein L15E 2238
13 1YIJ 15 M 50S Ribosomal Protein L15E 2238
14 1YI2 15 M 50S Ribosomal Protein L15E 2238
15 1VQ9 15 M 50S Ribosomal Protein L15E 2238
16 1VQ7 15 M 50S Ribosomal Protein L15E 2238
17 3CCM 13 M 50S ribosomal protein L15e 2238
18 1VQ5 15 M 50S Ribosomal Protein L15E 2238
19 3CCJ 13 M 50S ribosomal protein L15e 2238
20 3CC7 13 M 50S ribosomal protein L15e 2238
21 1YIT 19 M 50S RIBOSOMAL PROTEIN L15E 2238
22 3CCE 13 M 50S ribosomal protein L15e 2238
23 3G6E 14 M 50S ribosomal protein L15e 2238
24 3CPW 14 L 50S ribosomal protein L15e 2238
25 3CCU 13 M 50S ribosomal protein L15e 2238
26 1VQ6 16 M 50S Ribosomal Protein L15E 2238
27 1M90 15 N RIBOSOMAL PROTEIN L15E 2238
28 3CCL 13 M 50S ribosomal protein L15e 2238
29 1YJW 19 M 50S RIBOSOMAL PROTEIN L15E 2238
30 1YJ9 15 M 50S Ribosomal Protein L15E 2238
31 3CD6 13 M 50S ribosomal protein L15e 2238
32 3CCV 13 M 50S ribosomal protein L15e 2238
33 3CC4 13 M 50S ribosomal protein L15e 2238
34 2OTL 14 M 50S ribosomal protein L15e 2238
35 3G71 14 M 50S ribosomal protein L15e 2238
36 1FFK 11 I RIBOSOMAL PROTEIN L15E 2238
37 1VQ4 15 M 50S Ribosomal Protein L15E 2238
38 1YJN 15 M 50S Ribosomal Protein L15E 2238
39 3CMA 13 M 50S ribosomal protein L15e 2238
40 3CCS 13 M 50S ribosomal protein L15e 2238
41 3CCQ 13 M 50S ribosomal protein L15e 2238
42 3I56 13 M 50S ribosomal protein L15e 2238
43 3CCR 13 M 50S ribosomal protein L15e 2238
44 2OTJ 14 M 50S ribosomal protein L15e 2238
45 4V88 51 BN, DN 60S ribosomal protein L15-A 4932
46 1KQS 16 L RIBOSOMAL PROTEIN L15E 2238
47 3OW2 14 L 50S ribosomal protein L15e 2238
48 4U4R 51 M5, m5 60S ribosomal protein L15-A 4932
49 3CXC 15 L RIBOSOMAL PROTEIN L15E 2238
50 1QVG 15 L L15 Ribosomal Protein 2238
51 3CME 13 M 50S ribosomal protein L15e 2238
52 2QEX 14 M 50S ribosomal protein L15e 2238
53 4U3U 51 M5, m5 60S ribosomal protein L15-A 4932
54 1KC8 14 N RIBOSOMAL PROTEIN L15E 2238
55 4U3M 51 M5, m5 60S ribosomal protein L15-A 4932
56 1N8R 14 N 50S ribosomal protein L15E 2238
57 4U3N 51 M5, m5 60S ribosomal protein L15-A 4932
58 1Q81 15 N L15 Ribosomal Protein 2238
59 1Q82 15 N L15 Ribosomal Protein 2238
60 1QVF 15 L L15 Ribosomal Protein 2238
61 4U52 51 M5, m5 60S ribosomal protein L15-A 4932
62 4U4Q 51 M5, m5 60S ribosomal protein L15-A 4932
63 1NJI 14 N 50S ribosomal protein L15E 2238
64 4U6F 51 M5, m5 60S ribosomal protein L15-A 4932
65 4U4U 51 M5, m5 60S ribosomal protein L15-A 4932
66 1K73 14 N RIBOSOMAL PROTEIN L15E 2238
67 4U4Z 51 M5, m5 60S ribosomal protein L15-A 4932
68 4U4Y 51 M5, m5 60S ribosomal protein L15-A 4932
69 4U4N 51 M5, m5 60S ribosomal protein L15-A 4932
70 4U55 51 M5, m5 60S ribosomal protein L15-A 4932
71 1K9M 14 N RIBOSOMAL PROTEIN L15E 2238
72 1KD1 14 N RIBOSOMAL PROTEIN L15E 2238
73 3I55 14 M 50S ribosomal protein L15e 2238
74 5I4L 51 M5, m5 60S ribosomal protein L15-A 4932
75 4U51 51 M5, m5 60S ribosomal protein L15-A 4932
76 1K8A 14 N RIBOSOMAL PROTEIN L15E 2238
77 4U53 51 M5, m5 60S ribosomal protein L15-A 4932
78 1Q86 15 N L15 Ribosomal Protein 2238
79 4U50 51 M5, m5 60S ribosomal protein L15-A 4932
80 1M1K 14 N RIBOSOMAL PROTEIN L15E 2238
81 3G4S 14 M 50S ribosomal protein L15e 2238
82 1W2B 17 L 50S RIBOSOMAL PROTEIN L15E 2238
83 4U56 51 M5, m5 60S ribosomal protein L15-A 4932
84 2QA4 15 M 50S ribosomal protein L15e 2238
85 1Q7Y 15 N L15 Ribosomal Protein 2238
86 5FCJ 51 M5, m5 60S ribosomal protein L15-A 4932
87 4U4O 51 M5, m5 60S ribosomal protein L15-A 4932
88 4V8P 33 BL, CL, EL, GL RIBOSOMAL PROTEIN L15 5911
89 5FCI 51 M5, m5 60S ribosomal protein L15-A 4932
90 5DC3 51 M5, m5 60S ribosomal protein L15-A 4932
91 4V7R 44 BO, DO 60S ribosomal protein L15-A 4932
92 5IT7 16 NN Ribosomal protein L15 28985
93 3JCT 14 N 60S ribosomal protein L15-A 4932
94 3JCS 21 M ribosomal protein L15e 5661
95 5GAK 37 P 60S ribosomal protein L15-A 4932
96 5FL8 14 N 60S ribosomal protein L15-A 4932
97 5APN 16 N 60S ribosomal protein L15-A 4932
98 5APO 16 N 60S ribosomal protein L15-A 4932
99 3JBN 51 AP 60S ribosomal protein eL15 5833
100 3JBO 54 AP 60S ribosomal protein eL15 5833
101 3JBP 51 AP 60S ribosomal protein eL15 5833
102 3JAN 8 N Ribosomal protein eL15 SEE REMARK 999 9986
103 3JAJ 8 N Ribosomal protein eL15 SEE REMARK 999 9986
104 3JAG 13 N eL15 9986
105 3JAH 13 N eL15 9986
106 3JAI 13 N eL15 9986
107 4UG0 16 LN 60S RIBOSOMAL PROTEIN L15 9606
108 5AJ0 16 AN 60S ribosomal protein L15 9606
109 3J92 13 N eL15 9986
110 4D67 13 N 60S RIBOSOMAL PROTEIN L15 9986
111 4D5Y 13 N 60S RIBOSOMAL PROTEIN EL15 9986
112 4V3P 42 LP Ribosomal protein L15 4565
113 3J7O 16 N Ribosomal protein eL15 9823
114 3J7P 17 N Ribosomal protein eL15 9823
115 3J7Q 16 N Ribosomal protein eL15 9823
116 3J7R 16 N Ribosomal protein eL15 9823
117 4UJC 19 BN 60S RIBOSOMAL PROTEIN L15 9986
118 4UJD 16 AN 60S RIBOSOMAL PROTEIN L15 9986
119 3J79 16 P 60S ribosomal protein eL15 5833
120 3J77 15 65 60S ribosomal protein L15 4932
121 3J78 15 65 60S ribosomal protein L15 4932
122 3J6X 17 55 60S ribosomal protein L15 4932
123 3J6Y 17 55 60S ribosomal protein L15 4932
124 4UJE 50 CN 60S RIBOSOMAL PROTEIN L15 9986
125 4V91 16 N EL15 RIBOSOMAL PROTEIN EL15 28985
126 4V7F 18 O 60S ribosomal protein L15 4932
127 4V7E 45 CN 60S ribosomal protein L15E 4565
128 4V8Y 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932
129 4V8Z 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932
130 4V4N 60 AM 50S ribosomal protein L15E SEE REMARK 999 2190
131 4V6W 46 CN 60S ribosomal protein L15 7227
132 4V6X 46 CN 60S ribosomal protein L15 9606
133 4V8M 50 BQ RIBOSOMAL PROTEIN L15 185431
134 4V6U 59 BM 50S ribosomal protein L15e 2261
135 4V8T 14 N 60S RIBOSOMAL PROTEIN L15-A 4932
136 4ADX 23 M RPL15E 145262
137 4V6I 43 BP 60S ribosomal protein rpL15 (L15e) 4932
138 4V7H 36 BL 60S ribosomal protein L15(A) 5541
139 4V5Z 65 Bm 60S Ribosomal protein L15e 9612
140 4V4B 31 BL 60S ribosomal protein L15-A 4932