Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 734
95 % 36 68 522
90 % 36 68 551
70 % 36 68 605
50 % 36 138 233
40 % 36 138 258
30 % 43 418 37
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54054
95 % 1 1 37756
90 % 1 1 35988
70 % 36 68 599
50 % 36 133 243
40 % 36 133 269
30 % 36 133 283
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 458
90 % 36 74 484
70 % 36 74 527
50 % 36 74 603
40 % 36 74 653
30 % 42 407 43
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 456
90 % 36 74 482
70 % 36 74 524
50 % 36 76 579
40 % 36 76 627
30 % 36 78 601
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 525
90 % 36 68 555
70 % 36 68 608
50 % 36 70 662
40 % 36 70 707
30 % 36 70 708
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1908
95 % 36 68 521
90 % 36 68 550
70 % 36 68 604
50 % 36 68 696
40 % 36 70 704
30 % 36 71 690
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 526
90 % 36 68 556
70 % 36 68 609
50 % 36 70 664
40 % 36 70 709
30 % 36 71 693
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 364
95 % 36 68 519
90 % 36 68 548
70 % 36 68 602
50 % 36 68 693
40 % 36 68 726
30 % 36 137 271
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 464
90 % 36 74 490
70 % 36 74 535
50 % 36 76 581
40 % 36 78 599
30 % 42 352 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 462
90 % 36 74 488
70 % 36 74 533
50 % 36 142 222
40 % 36 142 253
30 % 36 142 264
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 340
95 % 34 70 503
90 % 34 70 529
70 % 34 70 580
50 % 34 70 665
40 % 34 70 710
30 % 34 70 710
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 465
90 % 36 74 491
70 % 36 74 536
50 % 36 74 611
40 % 36 74 661
30 % 36 74 654
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 520
90 % 36 68 549
70 % 36 68 603
50 % 36 68 694
40 % 36 70 703
30 % 36 71 689
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 528
90 % 36 68 558
70 % 36 68 611
50 % 36 68 699
40 % 36 68 729
30 % 36 68 730
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57181
95 % 3 5 12705
90 % 3 5 12466
70 % 3 5 11738
50 % 3 5 10524
40 % 3 5 9603
30 % 3 5 8365
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63147
95 % 1 1 43834
90 % 1 1 41793
70 % 3 21 2555
50 % 7 30 1717
40 % 7 91 391
30 % 26 114 330
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 530
90 % 36 68 560
70 % 36 68 613
50 % 36 69 682
40 % 36 69 721
30 % 36 69 724
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64488
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 135 236
40 % 36 135 263
30 % 36 135 276
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 527
90 % 36 68 557
70 % 36 68 610
50 % 36 68 698
40 % 36 68 728
30 % 36 133 284
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 350
95 % 36 68 518
90 % 36 68 547
70 % 36 68 601
50 % 36 68 692
40 % 36 137 259
30 % 43 413 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1885
95 % 36 68 516
90 % 36 68 545
70 % 36 68 598
50 % 36 133 242
40 % 36 135 262
30 % 36 135 274
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47782
95 % 36 74 448
90 % 36 74 475
70 % 36 74 519
50 % 36 74 596
40 % 36 142 250
30 % 36 142 261
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8867
95 % 36 74 451
90 % 36 74 478
70 % 36 74 522
50 % 36 74 598
40 % 36 76 625
30 % 36 77 612
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 457
90 % 36 74 483
70 % 36 74 525
50 % 36 74 601
40 % 37 142 252
30 % 37 142 263
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1920
95 % 3 21 2498
90 % 36 68 554
70 % 36 68 607
50 % 51 95 347
40 % 58 109 309
30 % 58 111 320
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56164
95 % 1 1 38928
90 % 1 7 9023
70 % 3 27 1875
50 % 36 74 602
40 % 36 79 585
30 % 36 79 591
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 459
90 % 36 74 485
70 % 36 74 530
50 % 36 74 607
40 % 37 77 611
30 % 37 78 605

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 15 M 50S ribosomal protein L15e 2238
2 1VQO 15 M 50S Ribosomal Protein L15E 2238
3 1VQ8 15 M 50S Ribosomal Protein L15E 2238
4 1S72 15 M 50S ribosomal protein L15e 2238
5 1JJ2 14 L RIBOSOMAL PROTEIN L15E 2238
6 1YHQ 15 M 50S Ribosomal Protein L15E 2238
7 1VQP 15 M 50S Ribosomal Protein L15E 2238
8 1VQM 15 M 50S Ribosomal Protein L15E 2238
9 3CC2 13 M 50S ribosomal protein L15e 2238
10 1VQL 15 M 50S Ribosomal Protein L15E 2238
11 1VQK 15 M 50S Ribosomal Protein L15E 2238
12 1VQN 16 M 50S Ribosomal Protein L15E 2238
13 1YIJ 15 M 50S Ribosomal Protein L15E 2238
14 1YI2 15 M 50S Ribosomal Protein L15E 2238
15 1VQ9 15 M 50S Ribosomal Protein L15E 2238
16 1VQ7 15 M 50S Ribosomal Protein L15E 2238
17 3CCM 13 M 50S ribosomal protein L15e 2238
18 1VQ5 15 M 50S Ribosomal Protein L15E 2238
19 3CCJ 13 M 50S ribosomal protein L15e 2238
20 3CC7 13 M 50S ribosomal protein L15e 2238
21 1YIT 19 M 50S RIBOSOMAL PROTEIN L15E 2238
22 3CCE 13 M 50S ribosomal protein L15e 2238
23 3G6E 14 M 50S ribosomal protein L15e 2238
24 3CPW 14 L 50S ribosomal protein L15e 2238
25 3CCU 13 M 50S ribosomal protein L15e 2238
26 1VQ6 16 M 50S Ribosomal Protein L15E 2238
27 1M90 15 N RIBOSOMAL PROTEIN L15E 2238
28 3CCL 13 M 50S ribosomal protein L15e 2238
29 1YJW 19 M 50S RIBOSOMAL PROTEIN L15E 2238
30 1YJ9 15 M 50S Ribosomal Protein L15E 2238
31 3CD6 13 M 50S ribosomal protein L15e 2238
32 3CCV 13 M 50S ribosomal protein L15e 2238
33 3CC4 13 M 50S ribosomal protein L15e 2238
34 2OTL 14 M 50S ribosomal protein L15e 2238
35 3G71 14 M 50S ribosomal protein L15e 2238
36 1FFK 11 I RIBOSOMAL PROTEIN L15E 2238
37 1VQ4 15 M 50S Ribosomal Protein L15E 2238
38 1YJN 15 M 50S Ribosomal Protein L15E 2238
39 3CMA 13 M 50S ribosomal protein L15e 2238
40 3CCS 13 M 50S ribosomal protein L15e 2238
41 3CCQ 13 M 50S ribosomal protein L15e 2238
42 3I56 13 M 50S ribosomal protein L15e 2238
43 3CCR 13 M 50S ribosomal protein L15e 2238
44 2OTJ 14 M 50S ribosomal protein L15e 2238
45 4V88 51 BN, DN 60S ribosomal protein L15-A 4932
46 1KQS 16 L RIBOSOMAL PROTEIN L15E 2238
47 3OW2 14 L 50S ribosomal protein L15e 2238
48 4U4R 51 M5, m5 60S ribosomal protein L15-A 4932
49 3CXC 15 L RIBOSOMAL PROTEIN L15E 2238
50 1QVG 15 L L15 Ribosomal Protein 2238
51 3CME 13 M 50S ribosomal protein L15e 2238
52 2QEX 14 M 50S ribosomal protein L15e 2238
53 4U3U 51 M5, m5 60S ribosomal protein L15-A 4932
54 1KC8 14 N RIBOSOMAL PROTEIN L15E 2238
55 4U3M 51 M5, m5 60S ribosomal protein L15-A 4932
56 1N8R 14 N 50S ribosomal protein L15E 2238
57 4U3N 51 M5, m5 60S ribosomal protein L15-A 4932
58 1Q81 15 N L15 Ribosomal Protein 2238
59 1Q82 15 N L15 Ribosomal Protein 2238
60 1QVF 15 L L15 Ribosomal Protein 2238
61 4U52 51 M5, m5 60S ribosomal protein L15-A 4932
62 4U4Q 51 M5, m5 60S ribosomal protein L15-A 4932
63 1NJI 14 N 50S ribosomal protein L15E 2238
64 4U6F 51 M5, m5 60S ribosomal protein L15-A 4932
65 4U4U 51 M5, m5 60S ribosomal protein L15-A 4932
66 1K73 14 N RIBOSOMAL PROTEIN L15E 2238
67 4U4Z 51 M5, m5 60S ribosomal protein L15-A 4932
68 4U4Y 51 M5, m5 60S ribosomal protein L15-A 4932
69 4U4N 51 M5, m5 60S ribosomal protein L15-A 4932
70 4U55 51 M5, m5 60S ribosomal protein L15-A 4932
71 1K9M 14 N RIBOSOMAL PROTEIN L15E 2238
72 1KD1 14 N RIBOSOMAL PROTEIN L15E 2238
73 3I55 14 M 50S ribosomal protein L15e 2238
74 4U51 51 M5, m5 60S ribosomal protein L15-A 4932
75 1K8A 14 N RIBOSOMAL PROTEIN L15E 2238
76 4U53 51 M5, m5 60S ribosomal protein L15-A 4932
77 1Q86 15 N L15 Ribosomal Protein 2238
78 4U50 51 M5, m5 60S ribosomal protein L15-A 4932
79 1M1K 14 N RIBOSOMAL PROTEIN L15E 2238
80 3G4S 14 M 50S ribosomal protein L15e 2238
81 1W2B 17 L 50S RIBOSOMAL PROTEIN L15E 2238
82 4U56 51 M5, m5 60S ribosomal protein L15-A 4932
83 2QA4 15 M 50S ribosomal protein L15e 2238
84 1Q7Y 15 N L15 Ribosomal Protein 2238
85 4U4O 51 M5, m5 60S ribosomal protein L15-A 4932
86 4V8P 33 BL, CL, EL, GL RIBOSOMAL PROTEIN L15 5911
87 4V7R 44 BO, DO 60S ribosomal protein L15-A 4932
88 5GAK 37 P 60S ribosomal protein L15-A 4932
89 5FL8 14 N 60S ribosomal protein L15-A 4932
90 5APN 16 N 60S ribosomal protein L15-A 4932
91 5APO 16 N 60S ribosomal protein L15-A 4932
92 3JBN 51 AP 60S ribosomal protein eL15 5833
93 3JBO 54 AP 60S ribosomal protein eL15 5833
94 3JBP 51 AP 60S ribosomal protein eL15 5833
95 3JAN 8 N Ribosomal protein eL15 SEE REMARK 999 9986
96 3JAJ 8 N Ribosomal protein eL15 SEE REMARK 999 9986
97 3JAG 13 N eL15 9986
98 3JAH 13 N eL15 9986
99 3JAI 13 N eL15 9986
100 4UG0 16 LN 60S RIBOSOMAL PROTEIN L15 9606
101 5AJ0 16 AN 60S ribosomal protein L15 9606
102 3J92 13 N eL15 9986
103 4D67 13 N 60S RIBOSOMAL PROTEIN L15 9986
104 4D5Y 13 N 60S RIBOSOMAL PROTEIN EL15 9986
105 4V3P 42 LP Ribosomal protein L15 4565
106 3J7O 16 N Ribosomal protein eL15 9823
107 3J7P 17 N Ribosomal protein eL15 9823
108 3J7Q 16 N Ribosomal protein eL15 9823
109 3J7R 16 N Ribosomal protein eL15 9823
110 4UJC 19 BN 60S RIBOSOMAL PROTEIN L15 9986
111 4UJD 16 AN 60S RIBOSOMAL PROTEIN L15 9986
112 3J79 16 P 60S ribosomal protein eL15 5833
113 3J77 15 65 60S ribosomal protein L15 4932
114 3J78 15 65 60S ribosomal protein L15 4932
115 3J6X 17 55 60S ribosomal protein L15 4932
116 3J6Y 17 55 60S ribosomal protein L15 4932
117 4UJE 50 CN 60S RIBOSOMAL PROTEIN L15 9986
118 4V91 16 N EL15 RIBOSOMAL PROTEIN EL15 28985
119 4V7F 18 O 60S ribosomal protein L15 4932
120 4V7E 45 CN 60S ribosomal protein L15E 4565
121 4V8Y 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932
122 4V8Z 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932
123 4V4N 60 AM 50S ribosomal protein L15E SEE REMARK 999 2190
124 4V6W 46 CN 60S ribosomal protein L15 7227
125 4V6X 46 CN 60S ribosomal protein L15 9606
126 4V8M 50 BQ RIBOSOMAL PROTEIN L15 185431
127 4V6U 59 BM 50S ribosomal protein L15e 2261
128 4V8T 14 N 60S RIBOSOMAL PROTEIN L15-A 4932
129 4ADX 23 M RPL15E 145262
130 4V6I 43 BP 60S ribosomal protein rpL15 (L15e) 4932
131 4V7H 36 BL 60S ribosomal protein L15(A) 5541
132 4V5Z 65 Bm 60S Ribosomal protein L15e 9612
133 4V4B 31 BL 60S ribosomal protein L15-A 4932