Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 827
95 % 36 68 660
90 % 36 68 689
70 % 36 68 734
50 % 36 175 201
40 % 36 175 223
30 % 44 509 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58832
95 % 1 1 41000
90 % 1 1 39021
70 % 36 68 726
50 % 36 171 207
40 % 36 171 231
30 % 36 171 237
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 584
90 % 36 74 615
70 % 36 74 645
50 % 36 74 693
40 % 36 74 732
30 % 43 491 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 415
95 % 36 74 582
90 % 36 74 613
70 % 36 74 642
50 % 36 76 664
40 % 36 76 707
30 % 36 79 675
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 469
95 % 36 68 661
90 % 36 68 691
70 % 36 68 736
50 % 36 70 757
40 % 36 70 793
30 % 36 70 784
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2168
95 % 36 68 659
90 % 36 68 687
70 % 36 68 732
50 % 36 68 784
40 % 36 72 759
30 % 36 72 751
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 471
95 % 36 68 664
90 % 36 68 693
70 % 36 68 739
50 % 36 70 759
40 % 36 70 795
30 % 36 71 766
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 485
95 % 36 68 657
90 % 36 68 685
70 % 36 68 729
50 % 36 68 781
40 % 36 68 816
30 % 36 174 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 422
95 % 36 74 588
90 % 36 74 619
70 % 36 74 651
50 % 36 76 669
40 % 36 78 688
30 % 43 399 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 587
90 % 36 74 618
70 % 36 74 650
50 % 36 179 196
40 % 36 179 216
30 % 36 179 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 448
95 % 34 70 631
90 % 34 70 660
70 % 34 70 709
50 % 34 70 760
40 % 34 70 798
30 % 34 70 788
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 423
95 % 36 74 589
90 % 36 74 620
70 % 36 74 652
50 % 36 74 698
40 % 36 74 735
30 % 36 74 727
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 658
90 % 36 68 686
70 % 36 68 730
50 % 36 68 782
40 % 36 70 790
30 % 36 71 763
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 473
95 % 36 68 666
90 % 36 68 695
70 % 36 68 741
50 % 36 68 787
40 % 36 68 820
30 % 36 68 809
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62170
95 % 3 5 13912
90 % 3 5 13660
70 % 3 5 12818
50 % 3 5 11446
40 % 3 5 10379
30 % 3 5 9008
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68458
95 % 1 1 47435
90 % 1 1 45092
70 % 3 21 2846
50 % 7 30 1900
40 % 7 128 299
30 % 26 151 269
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 475
95 % 36 68 669
90 % 36 68 698
70 % 36 68 745
50 % 36 69 769
40 % 36 69 809
30 % 36 69 802
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69860
95 % 36 68 670
90 % 36 68 699
70 % 36 68 746
50 % 36 172 204
40 % 36 172 228
30 % 36 172 234
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 472
95 % 36 68 665
90 % 36 68 694
70 % 36 68 740
50 % 36 68 786
40 % 36 68 819
30 % 36 168 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 466
95 % 36 68 656
90 % 36 68 684
70 % 36 68 728
50 % 36 68 780
40 % 36 173 224
30 % 44 500 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2151
95 % 36 68 653
90 % 36 68 681
70 % 36 68 724
50 % 36 170 206
40 % 36 172 227
30 % 36 172 233
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52086
95 % 36 74 573
90 % 36 74 605
70 % 36 74 638
50 % 36 74 687
40 % 36 179 214
30 % 36 179 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9805
95 % 36 74 578
90 % 36 74 611
70 % 36 74 641
50 % 36 74 689
40 % 36 76 705
30 % 37 78 683
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 416
95 % 36 74 583
90 % 36 74 614
70 % 36 74 643
50 % 36 74 691
40 % 37 179 215
30 % 37 179 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2179
95 % 3 21 2814
90 % 36 68 690
70 % 36 68 735
50 % 51 105 321
40 % 58 122 277
30 % 58 124 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61078
95 % 1 1 42249
90 % 1 7 9900
70 % 3 27 2114
50 % 36 74 692
40 % 36 79 676
30 % 36 79 677
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 418
95 % 36 74 585
90 % 36 74 616
70 % 36 74 648
50 % 36 74 697
40 % 37 77 700
30 % 37 78 686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 15 M 50S ribosomal protein L15e 2238
2 1VQO 15 M 50S Ribosomal Protein L15E 2238
3 1VQ8 15 M 50S Ribosomal Protein L15E 2238
4 1S72 15 M 50S ribosomal protein L15e 2238
5 1JJ2 14 L RIBOSOMAL PROTEIN L15E 2238
6 1YHQ 15 M 50S Ribosomal Protein L15E 2238
7 1VQP 15 M 50S Ribosomal Protein L15E 2238
8 1VQM 15 M 50S Ribosomal Protein L15E 2238
9 3CC2 13 M 50S ribosomal protein L15e 2238
10 1VQL 15 M 50S Ribosomal Protein L15E 2238
11 1VQK 15 M 50S Ribosomal Protein L15E 2238
12 1VQN 16 M 50S Ribosomal Protein L15E 2238
13 1YIJ 15 M 50S Ribosomal Protein L15E 2238
14 1YI2 15 M 50S Ribosomal Protein L15E 2238
15 1VQ9 15 M 50S Ribosomal Protein L15E 2238
16 1VQ7 15 M 50S Ribosomal Protein L15E 2238
17 3CCM 13 M 50S ribosomal protein L15e 2238
18 1VQ5 15 M 50S Ribosomal Protein L15E 2238
19 3CCJ 13 M 50S ribosomal protein L15e 2238
20 3CC7 13 M 50S ribosomal protein L15e 2238
21 1YIT 19 M 50S RIBOSOMAL PROTEIN L15E 2238
22 3CCE 13 M 50S ribosomal protein L15e 2238
23 3G6E 14 M 50S ribosomal protein L15e 2238
24 3CPW 14 L 50S ribosomal protein L15e 2238
25 3CCU 13 M 50S ribosomal protein L15e 2238
26 1VQ6 16 M 50S Ribosomal Protein L15E 2238
27 1M90 15 N RIBOSOMAL PROTEIN L15E 2238
28 3CCL 13 M 50S ribosomal protein L15e 2238
29 1YJW 19 M 50S RIBOSOMAL PROTEIN L15E 2238
30 1YJ9 15 M 50S Ribosomal Protein L15E 2238
31 3CD6 13 M 50S ribosomal protein L15e 2238
32 3CCV 13 M 50S ribosomal protein L15e 2238
33 3CC4 13 M 50S ribosomal protein L15e 2238
34 2OTL 14 M 50S ribosomal protein L15e 2238
35 3G71 14 M 50S ribosomal protein L15e 2238
36 1FFK 11 I RIBOSOMAL PROTEIN L15E 2238
37 1VQ4 15 M 50S Ribosomal Protein L15E 2238
38 1YJN 15 M 50S Ribosomal Protein L15E 2238
39 3CMA 13 M 50S ribosomal protein L15e 2238
40 3CCS 13 M 50S ribosomal protein L15e 2238
41 3CCQ 13 M 50S ribosomal protein L15e 2238
42 3I56 13 M 50S ribosomal protein L15e 2238
43 3CCR 13 M 50S ribosomal protein L15e 2238
44 2OTJ 14 M 50S ribosomal protein L15e 2238
45 4V88 51 BN, DN 60S ribosomal protein L15-A 4932
46 1KQS 16 L RIBOSOMAL PROTEIN L15E 2238
47 3OW2 14 L 50S ribosomal protein L15e 2238
48 4U4R 51 M5, m5 60S ribosomal protein L15-A 4932
49 3CXC 15 L RIBOSOMAL PROTEIN L15E 2238
50 1QVG 15 L L15 Ribosomal Protein 2238
51 3CME 13 M 50S ribosomal protein L15e 2238
52 2QEX 14 M 50S ribosomal protein L15e 2238
53 4U3U 51 M5, m5 60S ribosomal protein L15-A 4932
54 1KC8 14 N RIBOSOMAL PROTEIN L15E 2238
55 4U3M 51 M5, m5 60S ribosomal protein L15-A 4932
56 1N8R 14 N 50S ribosomal protein L15E 2238
57 4U3N 51 M5, m5 60S ribosomal protein L15-A 4932
58 1Q81 15 N L15 Ribosomal Protein 2238
59 1Q82 15 N L15 Ribosomal Protein 2238
60 1QVF 15 L L15 Ribosomal Protein 2238
61 4U52 51 M5, m5 60S ribosomal protein L15-A 4932
62 4U4Q 51 M5, m5 60S ribosomal protein L15-A 4932
63 1NJI 14 N 50S ribosomal protein L15E 2238
64 4U6F 51 M5, m5 60S ribosomal protein L15-A 4932
65 4U4U 51 M5, m5 60S ribosomal protein L15-A 4932
66 1K73 14 N RIBOSOMAL PROTEIN L15E 2238
67 4U4Z 51 M5, m5 60S ribosomal protein L15-A 4932
68 4U4Y 51 M5, m5 60S ribosomal protein L15-A 4932
69 4U4N 51 M5, m5 60S ribosomal protein L15-A 4932
70 4U55 51 M5, m5 60S ribosomal protein L15-A 4932
71 1K9M 14 N RIBOSOMAL PROTEIN L15E 2238
72 1KD1 14 N RIBOSOMAL PROTEIN L15E 2238
73 5DAT 51 M5 60S ribosomal protein L15-A 4932
74 5DAT 82 m5 60S ribosomal protein L15-A 4932
75 3I55 14 M 50S ribosomal protein L15e 2238
76 5I4L 51 M5, m5 60S ribosomal protein L15-A 4932
77 4U51 51 M5, m5 60S ribosomal protein L15-A 4932
78 1K8A 14 N RIBOSOMAL PROTEIN L15E 2238
79 4U53 51 M5, m5 60S ribosomal protein L15-A 4932
80 1Q86 15 N L15 Ribosomal Protein 2238
81 4U50 51 M5, m5 60S ribosomal protein L15-A 4932
82 5LYB 51 M5, m5 60S ribosomal protein L15-A 4932
83 1M1K 14 N RIBOSOMAL PROTEIN L15E 2238
84 3G4S 14 M 50S ribosomal protein L15e 2238
85 1W2B 17 L 50S RIBOSOMAL PROTEIN L15E 2238
86 4U56 51 M5, m5 60S ribosomal protein L15-A 4932
87 2QA4 15 M 50S ribosomal protein L15e 2238
88 5TGA 51 M5, m5 60S ribosomal protein L15-A 4932
89 1Q7Y 15 N L15 Ribosomal Protein 2238
90 5FCJ 51 M5, m5 60S ribosomal protein L15-A 4932
91 4U4O 51 M5, m5 60S ribosomal protein L15-A 4932
92 5DGV 51 M5, m5 60S ribosomal protein L15-A 4932
93 5DGE 51 M5, m5 60S ribosomal protein L15-A 4932
94 4V8P 33 BL, CL, EL, GL RIBOSOMAL PROTEIN L15 5911
95 5FCI 51 M5, m5 60S ribosomal protein L15-A 4932
96 5DC3 51 M5, m5 60S ribosomal protein L15-A 4932
97 5DGF 51 M5, m5 60S ribosomal protein L15-A 4932
98 5TGM 51 M5, m5 60S ribosomal protein L15-A 4932
99 4V7R 44 BO, DO 60S ribosomal protein L15-A 4932
100 5UMD 16 P Ribosomal protein L15 5833
101 5MC6 57 AQ 60S ribosomal protein L15-A 4932
102 5H4P 15 N 60S ribosomal protein L15-A 4932
103 5M1J 63 N5 60S ribosomal protein L15-A 4932
104 5LZS 13 N Ribosomal protein L15 9986
105 5LZT 13 N eL15 9986
106 5LZU 13 N Ribosomal protein L15 9986
107 5LZV 13 N eL15 9986
108 5LZW 13 N eL15 9986
109 5LZX 13 N Ribosomal protein L15 9986
110 5LZY 13 N Ribosomal protein L15 9986
111 5LZZ 13 N Ribosomal protein L15 9986
112 5T62 17 a 60S ribosomal protein L15-A 4932
113 5T6R 16 a 60S ribosomal protein L15-A 4932
114 5T5H 14 Q Ribosomal protein L15 5693
115 5T2A 15 O eL15 5661
116 5T2C 34 t 60S ribosomal protein L15 9606
117 5JUO 19 S eL15 (yeast L15) 4932
118 5JUP 19 S eL15 (yeast L15) 4932
119 5JUS 19 S eL15 (yeast L15) 4932
120 5JUT 19 S eL15 (yeast L15) 4932
121 5JUU 19 S eL15 (yeast L15) 4932
122 5JCS 27 N 60S ribosomal protein L15-A 4932
123 5IT7 16 NN Ribosomal protein L15 28985
124 3JCT 14 N 60S ribosomal protein L15-A 4932
125 3JCS 21 M ribosomal protein L15e 5661
126 5GAK 37 P 60S ribosomal protein L15-A 4932
127 5FL8 14 N 60S ribosomal protein L15-A 4932
128 5APN 16 N 60S ribosomal protein L15-A 4932
129 5APO 16 N 60S ribosomal protein L15-A 4932
130 3JBN 51 AP 60S ribosomal protein eL15 5833
131 3JBO 54 AP 60S ribosomal protein eL15 5833
132 3JBP 51 AP 60S ribosomal protein eL15 5833
133 3JAN 8 N Ribosomal protein eL15 SEE REMARK 999 9986
134 3JAJ 8 N Ribosomal protein eL15 SEE REMARK 999 9986
135 3JAG 13 N eL15 9986
136 3JAH 13 N eL15 9986
137 3JAI 13 N eL15 9986
138 4UG0 16 LN 60S RIBOSOMAL PROTEIN L15 9606
139 5AJ0 16 AN 60S ribosomal protein L15 9606
140 3J92 13 N eL15 9986
141 4D67 13 N 60S RIBOSOMAL PROTEIN L15 9986
142 4D5Y 13 N 60S RIBOSOMAL PROTEIN EL15 9986
143 4V3P 42 LP Ribosomal protein L15 4565
144 3J7O 16 N Ribosomal protein eL15 9823
145 3J7P 17 N Ribosomal protein eL15 9823
146 3J7Q 16 N Ribosomal protein eL15 9823
147 3J7R 16 N Ribosomal protein eL15 9823
148 4UJC 19 BN 60S RIBOSOMAL PROTEIN L15 9986
149 4UJD 16 AN 60S RIBOSOMAL PROTEIN L15 9986
150 3J79 16 P 60S ribosomal protein eL15 5833
151 3J77 15 65 60S ribosomal protein L15 4932
152 3J78 15 65 60S ribosomal protein L15 4932
153 3J6X 17 55 60S ribosomal protein L15 4932
154 3J6Y 17 55 60S ribosomal protein L15 4932
155 4UJE 50 CN 60S RIBOSOMAL PROTEIN L15 9986
156 4V91 16 N EL15 RIBOSOMAL PROTEIN EL15 28985
157 4V7F 18 O 60S ribosomal protein L15 4932
158 4V7E 45 CN 60S ribosomal protein L15E 4565
159 4V8Y 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932
160 4V8Z 48 BN 60S RIBOSOMAL PROTEIN L15-A 4932
161 4V4N 60 AM 50S ribosomal protein L15E SEE REMARK 999 2190
162 4V6W 46 CN 60S ribosomal protein L15 7227
163 4V6X 46 CN 60S ribosomal protein L15 9606
164 4V8M 50 BQ RIBOSOMAL PROTEIN L15 185431
165 4V6U 59 BM 50S ribosomal protein L15e 2261
166 4V8T 14 N 60S RIBOSOMAL PROTEIN L15-A 4932
167 4ADX 23 M RPL15E 145262
168 4V6I 43 BP 60S ribosomal protein rpL15 (L15e) 4932
169 4V7H 36 BL 60S ribosomal protein L15(A) 5541
170 4V5Z 65 Bm 60S Ribosomal protein L15e 9612
171 4V4B 31 BL 60S ribosomal protein L15-A 4932