Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 618
95 % 35 68 763 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 789
70 % 35 68 839
50 % 35 202 205
40 % 45 620 23
30 % 45 620 38
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49099
95 % 1 1 40683
90 % 1 1 38740
70 % 35 68 840
50 % 35 201 208
40 % 35 201 225
30 % 35 201 243
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 545
95 % 35 74 688 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 711
70 % 35 74 755
50 % 35 74 811
40 % 35 199 227
30 % 35 199 245
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 538
95 % 35 74 676 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 701
70 % 35 74 746
50 % 35 76 783
40 % 35 76 816
30 % 35 79 784
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 633
95 % 35 68 781 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 807
70 % 35 68 858
50 % 35 70 863
40 % 35 70 893
30 % 35 70 883
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2886
95 % 35 68 785 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 811
70 % 35 68 861
50 % 35 68 908
40 % 35 72 859
30 % 35 72 867
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 619
95 % 35 68 764 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 790
70 % 35 68 841
50 % 35 70 872
40 % 35 70 902
30 % 35 71 877
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 646
95 % 35 68 772 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 798
70 % 35 68 848
50 % 35 68 896
40 % 35 68 919
30 % 35 199 246
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 549
95 % 35 74 690 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 715
70 % 35 74 761
50 % 35 77 770
40 % 44 481 42
30 % 44 481 61
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 542
95 % 35 74 682 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 705
70 % 35 74 750
50 % 35 208 198
40 % 35 209 216
30 % 35 209 235
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 591
95 % 33 70 736 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 764
70 % 33 70 807
50 % 33 70 864
40 % 33 70 887
30 % 33 70 885
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 543
95 % 35 74 683 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 706
70 % 35 74 751
50 % 35 74 806
40 % 44 438 51
30 % 44 464 66
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 627
95 % 35 68 773 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 799
70 % 35 68 849
50 % 35 68 897
40 % 35 70 892
30 % 35 71 876
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 620
95 % 35 68 782 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 808
70 % 35 68 859
50 % 35 68 905
40 % 35 68 927
30 % 35 70 889
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59482
95 % 3 5 15486 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15159
70 % 3 5 14148
50 % 3 5 12499
40 % 3 5 11198
30 % 3 5 9528
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2798
95 % 3 21 3130 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3178
70 % 3 21 3125
50 % 7 30 2144
40 % 7 151 290
30 % 9 155 294
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 634
95 % 35 68 765 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 791
70 % 35 68 842
50 % 35 69 874
40 % 35 69 904
30 % 35 69 894
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59481
95 % 35 68 775 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 801
70 % 35 68 852
50 % 35 194 210
40 % 35 194 232
30 % 35 194 248
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 616
95 % 35 68 761 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 787
70 % 35 68 837
50 % 35 68 890
40 % 35 189 240
30 % 35 189 255
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 631
95 % 35 68 779 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 804
70 % 35 68 835
50 % 35 68 902
40 % 35 199 228
30 % 45 609 39
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2254
95 % 35 68 780 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 805
70 % 35 68 856
50 % 35 192 213
40 % 35 192 234
30 % 35 192 250
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61874
95 % 35 74 687 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 710
70 % 35 74 754
50 % 35 74 810
40 % 35 207 217
30 % 35 207 236
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 880
95 % 35 74 675 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 700
70 % 35 74 745
50 % 35 74 801
40 % 35 76 815
30 % 36 78 797
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 544
95 % 35 74 685 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 709
70 % 35 74 753
50 % 35 74 809
40 % 36 201 223
30 % 36 201 241
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2815
95 % 3 21 3145 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 786
70 % 35 68 836
50 % 51 107 401
40 % 58 130 314
30 % 72 276 156
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61871
95 % 1 1 50433
90 % 1 7 11460
70 % 3 27 2446
50 % 35 74 804
40 % 35 79 775
30 % 35 79 790
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 541
95 % 35 74 680 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 697
70 % 35 74 741
50 % 35 74 803
40 % 36 78 798
30 % 36 78 800

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 13 K 50S ribosomal protein L14P 2238
2 1VQO 13 K 50S ribosomal protein L14P 2238
3 1VQ8 13 K 50S ribosomal protein L14P 2238
4 1S72 13 K 50S ribosomal protein L14P 2238
5 1JJ2 12 J RIBOSOMAL PROTEIN L14 2238
6 1YHQ 13 K 50S ribosomal protein L14P 2238
7 1VQP 13 K 50S ribosomal protein L14P 2238
8 1VQM 13 K 50S ribosomal protein L14P 2238
9 3CC2 11 K 50S ribosomal protein L14P 2238
10 1VQL 13 K 50S ribosomal protein L14P 2238
11 1VQK 13 K 50S ribosomal protein L14P 2238
12 1VQN 14 K 50S ribosomal protein L14P 2238
13 1YIJ 13 K 50S ribosomal protein L14P 2238
14 1YI2 13 K 50S ribosomal protein L14P 2238
15 1VQ9 13 K 50S ribosomal protein L14P 2238
16 1VQ7 13 K 50S ribosomal protein L14P 2238
17 3CCM 11 K 50S ribosomal protein L14P 2238
18 1VQ5 13 K 50S ribosomal protein L14P 2238
19 3CC7 11 K 50S ribosomal protein L14P 2238
20 1YIT 17 K 50S RIBOSOMAL PROTEIN L14P 2238
21 3CCE 11 K 50S ribosomal protein L14P 2238
22 3G6E 12 K 50S ribosomal protein L14P 2238
23 3CPW 12 J 50S ribosomal protein L14P 2238
24 3CCU 11 K 50S ribosomal protein L14P 2238
25 1VQ6 14 K 50S ribosomal protein L14P 2238
26 1M90 13 L RIBOSOMAL PROTEIN L14 2238
27 3CCL 11 K 50S ribosomal protein L14P 2238
28 1YJW 17 K 50S RIBOSOMAL PROTEIN L14P 2238
29 1YJ9 13 K 50S ribosomal protein L14P 2238
30 3CD6 11 K 50S ribosomal protein L14P 2238
31 3CCV 11 K 50S ribosomal protein L14P 2238
32 3CC4 11 K 50S ribosomal protein L14P 2238
33 2OTL 12 K 50S ribosomal protein L14P 2238
34 3G71 12 K 50S ribosomal protein L14P 2238
35 1FFK 10 H RIBOSOMAL PROTEIN L14 2238
36 1VQ4 13 K 50S ribosomal protein L14P 2238
37 1YJN 13 K 50S ribosomal protein L14P 2238
38 3CMA 11 K 50S ribosomal protein L14P 2238
39 3CCS 11 K 50S ribosomal protein L14P 2238
40 3CCQ 11 K 50S ribosomal protein L14P 2238
41 3I56 11 K 50S ribosomal protein L14P 2238
42 3CCR 11 K 50S ribosomal protein L14P 2238
43 2OTJ 12 K 50S ribosomal protein L14P 2238
44 1KQS 14 J RIBOSOMAL PROTEIN L14 2238
45 3OW2 12 J 50S ribosomal protein L14P 2238
46 3CXC 13 J RIBOSOMAL PROTEIN L14 2238
47 1QVG 13 J 50S ribosomal protein L14P 2238
48 3CME 11 K 50S ribosomal protein L14P 2238
49 2QEX 12 K 50S ribosomal protein L14P 2238
50 1KC8 12 L RIBOSOMAL PROTEIN L14 2238
51 1N8R 12 L 50S ribosomal protein L14P 2238
52 1Q81 13 L 50S ribosomal protein L14P 2238
53 1Q82 13 L 50S ribosomal protein L14P 2238
54 1QVF 13 J 50S ribosomal protein L14P 2238
55 1NJI 12 L 50S ribosomal protein L14P 2238
56 1K73 12 L RIBOSOMAL PROTEIN L14 2238
57 1K9M 12 L RIBOSOMAL PROTEIN L14 2238
58 1KD1 12 L RIBOSOMAL PROTEIN L14 2238
59 3I55 12 K 50S ribosomal protein L14P 2238
60 1K8A 12 L RIBOSOMAL PROTEIN L14 2238
61 1Q86 13 L 50S ribosomal protein L14P 2238
62 1M1K 12 L RIBOSOMAL PROTEIN L14 2238
63 3G4S 12 K 50S ribosomal protein L14P 2238
64 3CCJ 11 K 50S ribosomal protein L14P 2238
65 1W2B 15 J 50S RIBOSOMAL PROTEIN L14P 2238
66 2QA4 13 K 50S ribosomal protein L14P 2238
67 1Q7Y 13 L 50S ribosomal protein L14P 2238
68 4ADX 21 K RPL14 145262