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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 265 Members. Sequence cutoff: 40% Cluster size: 120 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 13 K 50S ribosomal protein L14P 272569  
2 1VQO 13 K 50S ribosomal protein L14P 2238  
3 1VQ8 13 K 50S ribosomal protein L14P 2238  
4 1S72 13 K 50S ribosomal protein L14P 2238  
5 1JJ2 12 J RIBOSOMAL PROTEIN L14 2238  
6 1YHQ 13 K 50S ribosomal protein L14P 2238  
7 1VQP 13 K 50S ribosomal protein L14P 2238  
8 1VQM 13 K 50S ribosomal protein L14P 2238  
9 3CC2 11 K 50S ribosomal protein L14P 2238  
10 1VQL 13 K 50S ribosomal protein L14P 2238  
11 1VQK 13 K 50S ribosomal protein L14P 2238  
12 1VQN 14 K 50S ribosomal protein L14P 2238  
13 1YIJ 13 K 50S ribosomal protein L14P 2238  
14 1YI2 13 K 50S ribosomal protein L14P 2238  
15 1VQ9 13 K 50S ribosomal protein L14P 2238  
16 1VQ7 13 K 50S ribosomal protein L14P 2238  
17 3CCM 11 K 50S ribosomal protein L14P 272569  
18 1VQ5 13 K 50S ribosomal protein L14P 2238  
19 3CCJ 11 K 50S ribosomal protein L14P 272569  
20 3CC7 11 K 50S ribosomal protein L14P 2238  
21 1YIT 17 K 50S RIBOSOMAL PROTEIN L14P 2238  
22 3CCE 11 K 50S ribosomal protein L14P 272569  
23 3G6E 12 K 50S ribosomal protein L14P 2238  
24 3CPW 12 J 50S ribosomal protein L14P 2238  
25 3CCU 11 K 50S ribosomal protein L14P 272569  
26 1VQ6 14 K 50S ribosomal protein L14P 2238  
27 1M90 13 L RIBOSOMAL PROTEIN L14 2238  
28 3CCL 11 K 50S ribosomal protein L14P 272569  
29 1YJW 17 K 50S RIBOSOMAL PROTEIN L14P 2238  
30 1YJ9 13 K 50S ribosomal protein L14P 2238  
31 3CD6 11 K 50S ribosomal protein L14P 272569  
32 3CCV 11 K 50S ribosomal protein L14P 272569  
33 3CC4 11 K 50S ribosomal protein L14P 272569  
34 2OTL 12 K 50S ribosomal protein L14P 2238  
35 3G71 12 K 50S ribosomal protein L14P 2238  
36 1FFK 10 H RIBOSOMAL PROTEIN L14 2238  
37 1VQ4 13 K 50S ribosomal protein L14P 2238  
38 1YJN 13 K 50S ribosomal protein L14P 2238  
39 3CMA 11 K 50S ribosomal protein L14P 2238  
40 3CCS 11 K 50S ribosomal protein L14P 272569  
41 3CCQ 11 K 50S ribosomal protein L14P 272569  
42 3I56 11 K 50S ribosomal protein L14P 2238  
43 3CCR 11 K 50S ribosomal protein L14P 272569  
44 2OTJ 12 K 50S ribosomal protein L14P 2238  
45 4V88 59 BV, DV 60S ribosomal protein L23-A 559292  
46 1KQS 14 J RIBOSOMAL PROTEIN L14 2238  
47 3OW2 12 J 50S ribosomal protein L14P 2238  
48 4U4R 59 N3, n3 60S ribosomal protein L23-A 559292  
49 3CXC 13 J RIBOSOMAL PROTEIN L14 2238  
50 1QVG 13 J 50S ribosomal protein L14P 2238  
51 3CME 11 K 50S ribosomal protein L14P 2238  
52 2QEX 12 K 50S ribosomal protein L14P 2238  
53 4U3U 59 N3, n3 60S ribosomal protein L23-A 559292  
54 1KC8 12 L RIBOSOMAL PROTEIN L14 2238  
55 4U3M 59 N3, n3 60S ribosomal protein L23-A 559292  
56 1N8R 12 L 50S ribosomal protein L14P 2238  
57 4U3N 59 N3, n3 60S ribosomal protein L23-A 559292  
58 1Q81 13 L 50S ribosomal protein L14P 2238  
59 1Q82 13 L 50S ribosomal protein L14P 2238  
60 1QVF 13 J 50S ribosomal protein L14P 2238  
61 4U52 59 N3, n3 60S ribosomal protein L23-A 559292  
62 4U4Q 59 N3, n3 60S ribosomal protein L23-A 559292  
63 1NJI 12 L 50S ribosomal protein L14P 2238  
64 4U6F 59 N3, n3 60S ribosomal protein L23-A 559292  
65 4U4U 59 N3, n3 60S ribosomal protein L23-A 559292  
66 1K73 12 L RIBOSOMAL PROTEIN L14 2238  
67 4U4Z 59 N3, n3 60S ribosomal protein L23-A 559292  
68 4U4Y 59 N3, n3 60S ribosomal protein L23-A 559292  
69 4U4N 59 N3, n3 60S ribosomal protein L23-A 559292  
70 4U55 59 N3, n3 60S ribosomal protein L23-A 559292  
71 1K9M 12 L RIBOSOMAL PROTEIN L14 2238  
72 1KD1 12 L RIBOSOMAL PROTEIN L14 2238  
73 3I55 12 K 50S ribosomal protein L14P 2238  
74 4U51 59 N3, n3 60S ribosomal protein L23-A 559292  
75 1K8A 12 L RIBOSOMAL PROTEIN L14 2238  
76 4U53 59 N3, n3 60S ribosomal protein L23-A 559292  
77 1Q86 13 L 50S ribosomal protein L14P 2238  
78 4U50 59 N3, n3 60S ribosomal protein L23-A 559292  
79 1M1K 12 L RIBOSOMAL PROTEIN L14 2238  
80 3G4S 12 K 50S ribosomal protein L14P 2238  
81 1W2B 15 J 50S RIBOSOMAL PROTEIN L14P 2238  
82 4U56 59 N3, n3 60S ribosomal protein L23-A 559292  
83 2QA4 13 K 50S ribosomal protein L14P 2238  
84 1Q7Y 13 L 50S ribosomal protein L14P 2238  
85 4U4O 59 N3, n3 60S ribosomal protein L23-A 559292  
86 4V8P 31 BJ, CJ, EJ, GJ RPL23 5911  
87 4V7R 50 BU, DU 60S ribosomal protein L23 4932  
88 3J92 21 V uL14 9986  
89 4D67 21 V 60S RIBOSOMAL PROTEIN L23 9986  
90 4D5Y 21 V 60S RIBOSOMAL PROTEIN UL14 9986  
91 3J7O 24 V Ribosomal protein uL14 9823  
92 3J7P 25 V Ribosomal protein uL14 9823  
93 3J7Q 24 V Ribosomal protein uL14 9823  
94 3J7R 24 V Ribosomal protein uL14 9823  
95 4UJC 27 BV 60S RIBOSOMAL PROTEIN L23 9986  
96 4UJD 24 AV 60S RIBOSOMAL PROTEIN L23 9986  
97 3J79 13 M 60S ribosomal protein uL14 36329  
98 3J77 23 73 60S ribosomal protein L23 4932  
99 3J78 23 73 60S ribosomal protein L23 4932  
100 3J6X 25 63 60S ribosomal protein L23 580240  
101 3J6Y 25 63 60S ribosomal protein L23 580240  
102 4UJE 58 CV 60S RIBOSOMAL PROTEIN L23 9986  
103 4V91 24 V UL14 RIBOSOMAL PROTEIN UL14 28985  
104 4V7F 15 L 60S ribosomal protein L23 4932  
105 4V7E 44 CV 60S ribosomal protein L14 4565  
106 4V8Y 56 BV 60S RIBOSOMAL PROTEIN L23-A 4932  
107 4V8Z 56 BV 60S RIBOSOMAL PROTEIN L23-A 4932  
108 4V4N 56 AJ 50S ribosomal protein L14P SEE REMARK 999 2190  
109 4V6W 43 CV 60S ribosomal protein L23 7227  
110 4V6X 43 CV 60S ribosomal protein L23 9606  
111 4V8M 56 BW 60S RIBOSOMAL PROTEIN L23, PUTATIVE 185431  
112 4V6U 65 BJ 50S ribosomal protein L14P 186497  
113 4V8T 22 V 60S RIBOSOMAL PROTEIN L23-A 559292  
114 4ADX 21 K RPL14 187420  
115 3J16 11 I 40S ribosomal protein S24E 4932  
116 4V6I 42 BM 60S ribosomal protein rpL23 (L14p) 4932  
117 2X7N 3 C 60S RIBOSOMAL PROTEIN L23 RESIDUES 6-137 4932  
118 4V7H 42 BR 60S ribosomal protein L23 5541  
119 4V5Z 63 Bk 60S Ribosomal protein L23 9615  
120 4V4B 37 BR 60S ribosomal protein L23 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 657
95% 36 68 471
90% 36 68 493
70% 36 68 532
50% 36 120 239
40% 36 120 265
30% 41 333 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49138
95% 1 1 34441
90% 1 1 32922
70% 36 68 525
50% 36 118 245
40% 36 118 271
30% 36 118 291
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 413
90% 36 74 437
70% 36 74 467
50% 36 74 515
40% 36 74 553
30% 40 325 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 76 494
40% 36 76 532
30% 36 78 517
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 473
90% 36 68 496
70% 36 68 535
50% 36 70 571
40% 36 70 604
30% 36 70 605
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1704
95% 36 68 469
90% 36 68 491
70% 36 68 530
50% 36 68 605
40% 36 70 601
30% 36 71 586
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 475
90% 36 68 498
70% 36 68 537
50% 36 70 574
40% 36 70 608
30% 36 71 588
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 467
90% 36 68 489
70% 36 68 528
50% 36 68 602
40% 36 68 635
30% 36 121 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 416
90% 36 74 440
70% 36 74 470
50% 36 76 495
40% 36 78 511
30% 40 285 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 415
90% 36 74 439
70% 36 74 469
50% 36 127 221
40% 36 127 249
30% 36 127 266
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 313
95% 34 70 451
90% 34 70 472
70% 34 70 508
50% 34 70 575
40% 34 70 609
30% 34 70 607
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 417
90% 36 74 441
70% 36 74 471
50% 36 74 517
40% 36 74 556
30% 36 74 552
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 468
90% 36 68 490
70% 36 68 529
50% 36 68 603
40% 36 70 600
30% 36 71 585
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 477
90% 36 68 500
70% 36 68 539
50% 36 68 609
40% 36 68 640
30% 36 68 635
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52123
95% 3 5 11506
90% 3 5 11317
70% 3 5 10687
50% 3 5 9601
40% 3 5 8758
30% 3 5 7660
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57793
95% 1 1 40268
90% 1 1 38494
70% 3 21 2300
50% 7 30 1569
40% 7 76 416
30% 26 99 340
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 479
90% 36 68 502
70% 36 68 541
50% 36 69 592
40% 36 69 626
30% 36 69 623
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59080
95% 36 68 480
90% 36 68 503
70% 36 68 542
50% 36 120 240
40% 36 120 267
30% 36 120 286
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 476
90% 36 68 499
70% 36 68 538
50% 36 68 608
40% 36 68 639
30% 36 119 288
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 466
90% 36 68 488
70% 36 68 527
50% 36 68 601
40% 36 119 269
30% 41 328 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1687
95% 36 68 463
90% 36 68 486
70% 36 68 524
50% 36 118 244
40% 36 120 264
30% 36 120 283
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43342
95% 36 74 406
90% 36 74 430
70% 36 74 461
50% 36 74 508
40% 36 124 256
30% 36 124 273
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7964
95% 36 74 409
90% 36 74 433
70% 36 74 464
50% 36 74 510
40% 36 76 530
30% 36 77 523
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 412
90% 36 74 436
70% 36 74 466
50% 36 74 513
40% 36 125 253
30% 36 125 270
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1715
95% 3 21 2249
90% 36 68 495
70% 36 68 534
50% 51 95 309
40% 58 105 292
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51134
95% 1 1 35559
90% 1 7 8176
70% 3 27 1695
50% 36 74 514
40% 36 78 508
30% 36 78 518
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 414
90% 36 74 438
70% 36 74 468
50% 36 74 516
40% 37 77 521
30% 37 78 519
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.