Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 44 829
95 % 35 68 665
90 % 35 68 692
70 % 35 68 744
50 % 35 176 200
40 % 35 176 221
30 % 43 513 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59262
95 % 1 1 41301
90 % 1 1 39301
70 % 35 68 736
50 % 35 172 209
40 % 35 172 233
30 % 35 172 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 418
95 % 35 74 588
90 % 35 74 619
70 % 35 74 651
50 % 35 74 696
40 % 35 74 735
30 % 42 495 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 416
95 % 35 74 586
90 % 35 74 617
70 % 35 74 648
50 % 35 76 666
40 % 35 76 709
30 % 35 79 678
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 475
95 % 35 68 666
90 % 35 68 694
70 % 35 68 746
50 % 35 70 763
40 % 35 70 799
30 % 35 70 788
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2182
95 % 35 68 664
90 % 35 68 690
70 % 35 68 742
50 % 35 68 793
40 % 35 72 764
30 % 35 72 755
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 476
95 % 35 68 668
90 % 35 68 696
70 % 35 68 749
50 % 35 70 765
40 % 35 70 801
30 % 35 71 772
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 67 489
95 % 35 68 662
90 % 35 68 688
70 % 35 68 739
50 % 35 68 790
40 % 35 68 825
30 % 35 175 232
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 423
95 % 35 74 592
90 % 35 74 623
70 % 35 74 657
50 % 35 76 670
40 % 35 78 692
30 % 42 402 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 422
95 % 35 74 591
90 % 35 74 622
70 % 35 74 656
50 % 35 180 199
40 % 35 180 217
30 % 35 180 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 70 454
95 % 33 70 638
90 % 33 70 663
70 % 33 70 717
50 % 33 70 766
40 % 33 70 804
30 % 33 70 792
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 424
95 % 35 74 593
90 % 35 74 624
70 % 35 74 658
50 % 35 74 701
40 % 35 74 738
30 % 35 74 730
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 473
95 % 35 68 663
90 % 35 68 689
70 % 35 68 740
50 % 35 68 791
40 % 35 70 796
30 % 35 71 769
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 478
95 % 35 68 670
90 % 35 68 698
70 % 35 68 751
50 % 35 68 796
40 % 35 68 829
30 % 35 68 814
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62617
95 % 3 5 14045
90 % 3 5 13782
70 % 3 5 12926
50 % 3 5 11528
40 % 3 5 10459
30 % 3 5 9060
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68921
95 % 1 1 47746
90 % 1 1 45380
70 % 3 21 2865
50 % 7 30 1917
40 % 7 129 302
30 % 26 152 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 480
95 % 35 68 673
90 % 35 68 701
70 % 35 68 755
50 % 35 69 778
40 % 35 69 815
30 % 35 69 804
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70331
95 % 35 68 674
90 % 35 68 702
70 % 35 68 756
50 % 35 173 205
40 % 35 173 228
30 % 35 173 235
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 477
95 % 35 68 669
90 % 35 68 697
70 % 35 68 750
50 % 35 68 795
40 % 35 68 828
30 % 35 169 242
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 472
95 % 35 68 661
90 % 35 68 687
70 % 35 68 738
50 % 35 68 789
40 % 35 174 226
30 % 43 504 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2166
95 % 35 68 658
90 % 35 68 684
70 % 35 68 734
50 % 35 171 208
40 % 35 173 227
30 % 35 173 234
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52492
95 % 35 74 577
90 % 35 74 609
70 % 35 74 643
50 % 35 74 689
40 % 35 180 215
30 % 35 180 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9908
95 % 35 74 582
90 % 35 74 615
70 % 35 74 646
50 % 35 74 691
40 % 35 76 707
30 % 36 78 686
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 417
95 % 35 74 587
90 % 35 74 618
70 % 35 74 649
50 % 35 74 694
40 % 36 180 216
30 % 36 180 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2194
95 % 3 21 2836
90 % 35 68 693
70 % 35 68 745
50 % 50 105 322
40 % 57 122 280
30 % 57 124 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61521
95 % 1 1 42557
90 % 1 7 10001
70 % 3 27 2134
50 % 35 74 695
40 % 35 79 679
30 % 35 79 680
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 419
95 % 35 74 589
90 % 35 74 620
70 % 35 74 654
50 % 35 74 700
40 % 36 77 702
30 % 36 78 689

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 13 K 50S ribosomal protein L14P 2238
2 1VQO 13 K 50S ribosomal protein L14P 2238
3 1VQ8 13 K 50S ribosomal protein L14P 2238
4 1S72 13 K 50S ribosomal protein L14P 2238
5 1JJ2 12 J RIBOSOMAL PROTEIN L14 2238
6 1YHQ 13 K 50S ribosomal protein L14P 2238
7 1VQP 13 K 50S ribosomal protein L14P 2238
8 1VQM 13 K 50S ribosomal protein L14P 2238
9 3CC2 11 K 50S ribosomal protein L14P 2238
10 1VQL 13 K 50S ribosomal protein L14P 2238
11 1VQK 13 K 50S ribosomal protein L14P 2238
12 1VQN 14 K 50S ribosomal protein L14P 2238
13 1YIJ 13 K 50S ribosomal protein L14P 2238
14 1YI2 13 K 50S ribosomal protein L14P 2238
15 1VQ9 13 K 50S ribosomal protein L14P 2238
16 1VQ7 13 K 50S ribosomal protein L14P 2238
17 3CCM 11 K 50S ribosomal protein L14P 2238
18 1VQ5 13 K 50S ribosomal protein L14P 2238
19 3CC7 11 K 50S ribosomal protein L14P 2238
20 1YIT 17 K 50S RIBOSOMAL PROTEIN L14P 2238
21 3CCE 11 K 50S ribosomal protein L14P 2238
22 3G6E 12 K 50S ribosomal protein L14P 2238
23 3CPW 12 J 50S ribosomal protein L14P 2238
24 3CCU 11 K 50S ribosomal protein L14P 2238
25 1VQ6 14 K 50S ribosomal protein L14P 2238
26 1M90 13 L RIBOSOMAL PROTEIN L14 2238
27 3CCL 11 K 50S ribosomal protein L14P 2238
28 1YJW 17 K 50S RIBOSOMAL PROTEIN L14P 2238
29 1YJ9 13 K 50S ribosomal protein L14P 2238
30 3CD6 11 K 50S ribosomal protein L14P 2238
31 3CCV 11 K 50S ribosomal protein L14P 2238
32 3CC4 11 K 50S ribosomal protein L14P 2238
33 2OTL 12 K 50S ribosomal protein L14P 2238
34 3G71 12 K 50S ribosomal protein L14P 2238
35 1FFK 10 H RIBOSOMAL PROTEIN L14 2238
36 1VQ4 13 K 50S ribosomal protein L14P 2238
37 1YJN 13 K 50S ribosomal protein L14P 2238
38 3CMA 11 K 50S ribosomal protein L14P 2238
39 3CCS 11 K 50S ribosomal protein L14P 2238
40 3CCQ 11 K 50S ribosomal protein L14P 2238
41 3I56 11 K 50S ribosomal protein L14P 2238
42 3CCR 11 K 50S ribosomal protein L14P 2238
43 2OTJ 12 K 50S ribosomal protein L14P 2238
44 4V88 59 BV, DV 60S ribosomal protein L23-A 4932
45 1KQS 14 J RIBOSOMAL PROTEIN L14 2238
46 3OW2 12 J 50S ribosomal protein L14P 2238
47 4U4R 59 N3, n3 60S ribosomal protein L23-A 4932
48 3CXC 13 J RIBOSOMAL PROTEIN L14 2238
49 1QVG 13 J 50S ribosomal protein L14P 2238
50 3CME 11 K 50S ribosomal protein L14P 2238
51 2QEX 12 K 50S ribosomal protein L14P 2238
52 4U3U 59 N3, n3 60S ribosomal protein L23-A 4932
53 1KC8 12 L RIBOSOMAL PROTEIN L14 2238
54 4U3M 59 N3, n3 60S ribosomal protein L23-A 4932
55 1N8R 12 L 50S ribosomal protein L14P 2238
56 4U3N 59 N3, n3 60S ribosomal protein L23-A 4932
57 1Q81 13 L 50S ribosomal protein L14P 2238
58 1Q82 13 L 50S ribosomal protein L14P 2238
59 1QVF 13 J 50S ribosomal protein L14P 2238
60 4U52 59 N3, n3 60S ribosomal protein L23-A 4932
61 4U4Q 59 N3, n3 60S ribosomal protein L23-A 4932
62 1NJI 12 L 50S ribosomal protein L14P 2238
63 4U6F 59 N3, n3 60S ribosomal protein L23-A 4932
64 4U4U 59 N3, n3 60S ribosomal protein L23-A 4932
65 1K73 12 L RIBOSOMAL PROTEIN L14 2238
66 4U4Z 59 N3, n3 60S ribosomal protein L23-A 4932
67 4U4Y 59 N3, n3 60S ribosomal protein L23-A 4932
68 4U4N 59 N3, n3 60S ribosomal protein L23-A 4932
69 4U55 59 N3, n3 60S ribosomal protein L23-A 4932
70 1K9M 12 L RIBOSOMAL PROTEIN L14 2238
71 1KD1 12 L RIBOSOMAL PROTEIN L14 2238
72 5DAT 59 N3, n3 60S ribosomal protein L23-A 4932
73 3I55 12 K 50S ribosomal protein L14P 2238
74 5I4L 59 N3, n3 60S ribosomal protein L23-A 4932
75 4U51 59 N3, n3 60S ribosomal protein L23-A 4932
76 1K8A 12 L RIBOSOMAL PROTEIN L14 2238
77 4U53 59 N3, n3 60S ribosomal protein L23-A 4932
78 1Q86 13 L 50S ribosomal protein L14P 2238
79 4U50 59 N3, n3 60S ribosomal protein L23-A 4932
80 5LYB 59 N3, n3 60S ribosomal protein L23-A 4932
81 1M1K 12 L RIBOSOMAL PROTEIN L14 2238
82 3G4S 12 K 50S ribosomal protein L14P 2238
83 3CCJ 11 K 50S ribosomal protein L14P 2238
84 1W2B 15 J 50S RIBOSOMAL PROTEIN L14P 2238
85 4U56 59 N3, n3 60S ribosomal protein L23-A 4932
86 2QA4 13 K 50S ribosomal protein L14P 2238
87 5TGA 59 N3, n3 60S ribosomal protein L23-A 4932
88 1Q7Y 13 L 50S ribosomal protein L14P 2238
89 5FCJ 59 N3, n3 60S ribosomal protein L23-A 4932
90 4U4O 59 N3, n3 60S ribosomal protein L23-A 4932
91 5DGV 59 N3, n3 60S ribosomal protein L23-A 4932
92 5DGE 59 N3, n3 60S ribosomal protein L23-A 4932
93 4V8P 31 BJ, CJ, EJ, GJ RPL23 5911
94 5FCI 59 N3, n3 60S ribosomal protein L23-A 4932
95 5DC3 59 N3, n3 60S ribosomal protein L23-A 4932
96 5DGF 59 N3, n3 60S ribosomal protein L23-A 4932
97 5TGM 59 N3, n3 60S ribosomal protein L23-A 4932
98 4V7R 50 BU, DU 60S ribosomal protein L23 4932
99 5UMD 13 M 60S ribosomal protein L23, putative 5833
100 5MC6 42 AB 60S ribosomal protein L23-A 4932
101 5H4P 23 V 60S ribosomal protein L23-A 4932
102 5M1J 70 V5 60S ribosomal protein L23-A 4932
103 5LZS 21 V Uncharacterized protein 9986
104 5LZT 21 V uL14 9986
105 5LZU 21 V uL14 9986
106 5LZV 21 V uL14 9986
107 5LZW 21 V uL14 9986
108 5LZX 21 V uL14 9986
109 5LZY 21 V eL14 9986
110 5LZZ 21 V uL14 9986
111 5T62 25 i 60S ribosomal protein L23-A 4932
112 5T6R 24 i 60S ribosomal protein L23-A 4932
113 5T5H 20 W 60S ribosomal protein L23 5693
114 5T2A 21 U uL14 5661
115 5T2C 12 P 60S ribosomal protein L23 9606
116 5LKS 24 LV 60S ribosomal protein L23 9606
117 5JUO 27 AA uL14 (yeast L23) 4932
118 5JUP 27 AA uL14 (yeast L23) 4932
119 5JUS 27 AA uL14 (yeast L23) 4932
120 5JUT 27 AA uL14 (yeast L23) 4932
121 5JUU 27 AA uL14 (yeast L23) 4932
122 5JCS 43 V 60S ribosomal protein L23-A 4932
123 5IT7 24 VV KLLA0E06997p 28985
124 3JCT 22 V 60S ribosomal protein L23-A 4932
125 3JCS 18 J ribosomal protein L14 5661
126 5GAK 2 X 60S ribosomal protein L23-A 4932
127 5FL8 22 V 60S ribosomal protein L23-A 4932
128 5APN 24 V 60S ribosomal protein L23-A 4932
129 5APO 24 V 60S ribosomal protein L23-A 4932
130 3JBN 58 AM 60S ribosomal protein uL14 5833
131 3JBO 59 AM 60S ribosomal protein uL14 5833
132 3JBP 58 AM 60S ribosomal protein uL14 5833
133 5AN9 5 E 60S RIBOSOMAL PROTEIN L23 44689
134 5ANB 5 E 60S RIBOSOMAL PROTEIN L23 44689
135 5ANC 5 E 60S RIBOSOMAL PROTEIN L23 44689
136 3JAN 15 V Ribosomal protein uL14 SEE REMARK 999 9986
137 3JAJ 15 V Ribosomal protein uL14 SEE REMARK 999 9986
138 3JAG 21 V uL14 9986
139 3JAH 21 V uL14 9986
140 3JAI 21 V uL14 9986
141 4UG0 24 LV 60S RIBOSOMAL PROTEIN L23 9606
142 5AJ0 24 AV 60S ribosomal protein L23 9606
143 3J92 21 V uL14 9986
144 4D67 21 V 60S RIBOSOMAL PROTEIN L23 9986
145 4D5Y 21 V 60S RIBOSOMAL PROTEIN UL14 9986
146 4V3P 41 LM Ribosomal Pr 117 4565
147 3J7O 24 V Ribosomal protein uL14 9823
148 3J7P 25 V Ribosomal protein uL14 9823
149 3J7Q 24 V Ribosomal protein uL14 9823
150 3J7R 24 V Ribosomal protein uL14 9823
151 4UJC 27 BV 60S RIBOSOMAL PROTEIN L23 9986
152 4UJD 24 AV 60S RIBOSOMAL PROTEIN L23 9986
153 3J79 13 M 60S ribosomal protein uL14 5833
154 3J77 23 73 60S ribosomal protein L23 4932
155 3J78 23 73 60S ribosomal protein L23 4932
156 3J6X 25 63 60S ribosomal protein L23 4932
157 3J6Y 25 63 60S ribosomal protein L23 4932
158 4UJE 58 CV 60S RIBOSOMAL PROTEIN L23 9986
159 4V91 24 V UL14 RIBOSOMAL PROTEIN UL14 28985
160 4V7F 15 L 60S ribosomal protein L23 4932
161 4V7E 44 CV 60S ribosomal protein L14 4565
162 4V8Y 56 BV 60S RIBOSOMAL PROTEIN L23-A 4932
163 4V8Z 56 BV 60S RIBOSOMAL PROTEIN L23-A 4932
164 4V4N 56 AJ 50S ribosomal protein L14P SEE REMARK 999 2190
165 4V6W 43 CV 60S ribosomal protein L23 7227
166 4V6X 43 CV 60S ribosomal protein L23 9606
167 4V8M 56 BW 60S RIBOSOMAL PROTEIN L23, PUTATIVE 185431
168 4V6U 65 BJ 50S ribosomal protein L14P 2261
169 4V8T 22 V 60S RIBOSOMAL PROTEIN L23-A 4932
170 4ADX 21 K RPL14 145262
171 3J16 11 I 40S ribosomal protein S24E 4932
172 4V6I 42 BM 60S ribosomal protein rpL23 (L14p) 4932
173 2X7N 3 C 60S RIBOSOMAL PROTEIN L23 RESIDUES 6-137 4932
174 4V7H 42 BR 60S ribosomal protein L23 5541
175 4V5Z 63 Bk 60S Ribosomal protein L23 9612
176 4V4B 37 BR 60S ribosomal protein L23 4932