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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 266 Members. Sequence cutoff: 40% Cluster size: 123 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 13 K 50S ribosomal protein L14P 272569  
2 1VQO 13 K 50S ribosomal protein L14P 2238  
3 1VQ8 13 K 50S ribosomal protein L14P 2238  
4 1S72 13 K 50S ribosomal protein L14P 2238  
5 1JJ2 12 J RIBOSOMAL PROTEIN L14 2238  
6 1YHQ 13 K 50S ribosomal protein L14P 2238  
7 1VQP 13 K 50S ribosomal protein L14P 2238  
8 1VQM 13 K 50S ribosomal protein L14P 2238  
9 3CC2 11 K 50S ribosomal protein L14P 2238  
10 1VQL 13 K 50S ribosomal protein L14P 2238  
11 1VQK 13 K 50S ribosomal protein L14P 2238  
12 1VQN 14 K 50S ribosomal protein L14P 2238  
13 1YIJ 13 K 50S ribosomal protein L14P 2238  
14 1YI2 13 K 50S ribosomal protein L14P 2238  
15 1VQ9 13 K 50S ribosomal protein L14P 2238  
16 1VQ7 13 K 50S ribosomal protein L14P 2238  
17 3CCM 11 K 50S ribosomal protein L14P 2238  
18 1VQ5 13 K 50S ribosomal protein L14P 2238  
19 3CCJ 11 K 50S ribosomal protein L14P 2238  
20 3CC7 11 K 50S ribosomal protein L14P 2238  
21 1YIT 17 K 50S RIBOSOMAL PROTEIN L14P 2238  
22 3CCE 11 K 50S ribosomal protein L14P 2238  
23 3G6E 12 K 50S ribosomal protein L14P 2238  
24 3CPW 12 J 50S ribosomal protein L14P 2238  
25 3CCU 11 K 50S ribosomal protein L14P 2238  
26 1VQ6 14 K 50S ribosomal protein L14P 2238  
27 1M90 13 L RIBOSOMAL PROTEIN L14 2238  
28 3CCL 11 K 50S ribosomal protein L14P 2238  
29 1YJW 17 K 50S RIBOSOMAL PROTEIN L14P 2238  
30 1YJ9 13 K 50S ribosomal protein L14P 2238  
31 3CD6 11 K 50S ribosomal protein L14P 2238  
32 3CCV 11 K 50S ribosomal protein L14P 2238  
33 3CC4 11 K 50S ribosomal protein L14P 2238  
34 2OTL 12 K 50S ribosomal protein L14P 2238  
35 3G71 12 K 50S ribosomal protein L14P 2238  
36 1FFK 10 H RIBOSOMAL PROTEIN L14 2238  
37 1VQ4 13 K 50S ribosomal protein L14P 2238  
38 1YJN 13 K 50S ribosomal protein L14P 2238  
39 3CMA 11 K 50S ribosomal protein L14P 2238  
40 3CCS 11 K 50S ribosomal protein L14P 2238  
41 3CCQ 11 K 50S ribosomal protein L14P 2238  
42 3I56 11 K 50S ribosomal protein L14P 2238  
43 3CCR 11 K 50S ribosomal protein L14P 2238  
44 2OTJ 12 K 50S ribosomal protein L14P 2238  
45 4V88 59 BV, DV 60S ribosomal protein L23-A 559292  
46 1KQS 14 J RIBOSOMAL PROTEIN L14 2238  
47 3OW2 12 J 50S ribosomal protein L14P 2238  
48 4U4R 59 N3, n3 60S ribosomal protein L23-A 559292  
49 3CXC 13 J RIBOSOMAL PROTEIN L14 2238  
50 1QVG 13 J 50S ribosomal protein L14P 2238  
51 3CME 11 K 50S ribosomal protein L14P 2238  
52 2QEX 12 K 50S ribosomal protein L14P 2238  
53 4U3U 59 N3, n3 60S ribosomal protein L23-A 559292  
54 1KC8 12 L RIBOSOMAL PROTEIN L14 2238  
55 4U3M 59 N3, n3 60S ribosomal protein L23-A 559292  
56 1N8R 12 L 50S ribosomal protein L14P 2238  
57 4U3N 59 N3, n3 60S ribosomal protein L23-A 559292  
58 1Q81 13 L 50S ribosomal protein L14P 2238  
59 1Q82 13 L 50S ribosomal protein L14P 2238  
60 1QVF 13 J 50S ribosomal protein L14P 2238  
61 4U52 59 N3, n3 60S ribosomal protein L23-A 559292  
62 4U4Q 59 N3, n3 60S ribosomal protein L23-A 559292  
63 1NJI 12 L 50S ribosomal protein L14P 2238  
64 4U6F 59 N3, n3 60S ribosomal protein L23-A 559292  
65 4U4U 59 N3, n3 60S ribosomal protein L23-A 559292  
66 1K73 12 L RIBOSOMAL PROTEIN L14 2238  
67 4U4Z 59 N3, n3 60S ribosomal protein L23-A 559292  
68 4U4Y 59 N3, n3 60S ribosomal protein L23-A 559292  
69 4U4N 59 N3, n3 60S ribosomal protein L23-A 559292  
70 4U55 59 N3, n3 60S ribosomal protein L23-A 559292  
71 1K9M 12 L RIBOSOMAL PROTEIN L14 2238  
72 1KD1 12 L RIBOSOMAL PROTEIN L14 2238  
73 3I55 12 K 50S ribosomal protein L14P 2238  
74 4U51 59 N3, n3 60S ribosomal protein L23-A 559292  
75 1K8A 12 L RIBOSOMAL PROTEIN L14 2238  
76 4U53 59 N3, n3 60S ribosomal protein L23-A 559292  
77 1Q86 13 L 50S ribosomal protein L14P 2238  
78 4U50 59 N3, n3 60S ribosomal protein L23-A 559292  
79 1M1K 12 L RIBOSOMAL PROTEIN L14 2238  
80 3G4S 12 K 50S ribosomal protein L14P 2238  
81 1W2B 15 J 50S RIBOSOMAL PROTEIN L14P 2238  
82 4U56 59 N3, n3 60S ribosomal protein L23-A 559292  
83 2QA4 13 K 50S ribosomal protein L14P 2238  
84 1Q7Y 13 L 50S ribosomal protein L14P 2238  
85 4U4O 59 N3, n3 60S ribosomal protein L23-A 559292  
86 4V8P 31 BJ, CJ, EJ, GJ RPL23 5911  
87 4V7R 50 BU, DU 60S ribosomal protein L23 4932  
88 4UG0 24 LV 60S RIBOSOMAL PROTEIN L23 9606  
89 5AJ0 24 AV 60S ribosomal protein L23 9606  
90 3J92 21 V uL14 9986  
91 4D67 21 V 60S RIBOSOMAL PROTEIN L23 9986  
92 4D5Y 21 V 60S RIBOSOMAL PROTEIN UL14 9986  
93 4V3P 41 LM Ribosomal Pr 117 4565  
94 3J7O 24 V Ribosomal protein uL14 9823  
95 3J7P 25 V Ribosomal protein uL14 9823  
96 3J7Q 24 V Ribosomal protein uL14 9823  
97 3J7R 24 V Ribosomal protein uL14 9823  
98 4UJC 27 BV 60S RIBOSOMAL PROTEIN L23 9986  
99 4UJD 24 AV 60S RIBOSOMAL PROTEIN L23 9986  
100 3J79 13 M 60S ribosomal protein uL14 36329  
101 3J77 23 73 60S ribosomal protein L23 4932  
102 3J78 23 73 60S ribosomal protein L23 4932  
103 3J6X 25 63 60S ribosomal protein L23 580240  
104 3J6Y 25 63 60S ribosomal protein L23 580240  
105 4UJE 58 CV 60S RIBOSOMAL PROTEIN L23 9986  
106 4V91 24 V UL14 RIBOSOMAL PROTEIN UL14 28985  
107 4V7F 15 L 60S ribosomal protein L23 4932  
108 4V7E 44 CV 60S ribosomal protein L14 4565  
109 4V8Y 56 BV 60S RIBOSOMAL PROTEIN L23-A 4932  
110 4V8Z 56 BV 60S RIBOSOMAL PROTEIN L23-A 4932  
111 4V4N 56 AJ 50S ribosomal protein L14P SEE REMARK 999 2190  
112 4V6W 43 CV 60S ribosomal protein L23 7227  
113 4V6X 43 CV 60S ribosomal protein L23 9606  
114 4V8M 56 BW 60S RIBOSOMAL PROTEIN L23, PUTATIVE 185431  
115 4V6U 65 BJ 50S ribosomal protein L14P 186497  
116 4V8T 22 V 60S RIBOSOMAL PROTEIN L23-A 559292  
117 4ADX 21 K RPL14 187420  
118 3J16 11 I 40S ribosomal protein S24E 4932  
119 4V6I 42 BM 60S ribosomal protein rpL23 (L14p) 4932  
120 2X7N 3 C 60S RIBOSOMAL PROTEIN L23 RESIDUES 6-137 4932  
121 4V7H 42 BR 60S ribosomal protein L23 5541  
122 4V5Z 63 Bk 60S Ribosomal protein L23 9615  
123 4V4B 37 BR 60S ribosomal protein L23 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 672
95% 36 68 479
90% 36 68 503
70% 36 68 541
50% 36 123 238
40% 36 123 266
30% 41 360 44
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50039
95% 1 1 35061
90% 1 1 33501
70% 36 68 534
50% 36 121 245
40% 36 121 271
30% 36 121 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 418
90% 36 74 444
70% 36 74 477
50% 36 74 531
40% 36 74 570
30% 40 352 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 416
90% 36 74 442
70% 36 74 474
50% 36 76 501
40% 36 76 544
30% 36 78 530
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 481
90% 36 68 506
70% 36 68 544
50% 36 70 588
40% 36 70 625
30% 36 70 627
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1741
95% 36 68 477
90% 36 68 501
70% 36 68 539
50% 36 68 623
40% 36 70 624
30% 36 71 607
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 483
90% 36 68 508
70% 36 68 547
50% 36 70 591
40% 36 70 629
30% 36 71 609
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 475
90% 36 68 499
70% 36 68 537
50% 36 68 620
40% 36 68 652
30% 36 124 276
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 421
90% 36 74 447
70% 36 74 481
50% 36 76 506
40% 36 78 525
30% 40 309 60
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 420
90% 36 74 446
70% 36 74 480
50% 36 130 223
40% 36 130 247
30% 36 130 262
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 316
95% 34 70 461
90% 34 70 482
70% 34 70 517
50% 34 70 593
40% 34 70 631
30% 34 70 630
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 297
95% 36 74 422
90% 36 74 448
70% 36 74 482
50% 36 74 535
40% 36 74 574
30% 36 74 569
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 476
90% 36 68 500
70% 36 68 538
50% 36 68 621
40% 36 70 623
30% 36 71 606
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 485
90% 36 68 510
70% 36 68 549
50% 36 68 627
40% 36 68 658
30% 36 68 656
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53052
95% 3 5 11691
90% 3 5 11503
70% 3 5 10871
50% 3 5 9760
40% 3 5 8909
30% 3 5 7785
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58785
95% 1 1 40938
90% 1 1 39117
70% 3 21 2351
50% 7 30 1594
40% 7 79 409
30% 26 102 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 487
90% 36 68 512
70% 36 68 551
50% 36 69 612
40% 36 69 646
30% 36 69 644
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60088
95% 36 68 488
90% 36 68 513
70% 36 68 552
50% 36 123 239
40% 36 123 267
30% 36 123 284
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 484
90% 36 68 509
70% 36 68 548
50% 36 68 626
40% 36 68 657
30% 36 122 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 474
90% 36 68 498
70% 36 68 536
50% 36 68 619
40% 36 122 269
30% 41 355 49
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1722
95% 36 68 472
90% 36 68 495
70% 36 68 533
50% 36 121 244
40% 36 123 265
30% 36 123 283
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44169
95% 36 74 409
90% 36 74 435
70% 36 74 469
50% 36 74 522
40% 36 127 254
30% 36 127 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8133
95% 36 74 413
90% 36 74 439
70% 36 74 473
50% 36 74 524
40% 36 76 540
30% 36 77 535
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 417
90% 36 74 443
70% 36 74 475
50% 36 74 529
40% 36 128 250
30% 36 128 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1752
95% 3 21 2296
90% 36 68 505
70% 36 68 543
50% 51 95 315
40% 58 105 295
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52065
95% 1 1 36189
90% 1 7 8319
70% 3 27 1727
50% 36 74 530
40% 36 79 512
30% 36 79 522
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 419
90% 36 74 445
70% 36 74 479
50% 36 74 533
40% 37 77 533
30% 37 78 531
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.