Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 757
95 % 36 68 540
90 % 36 68 568
70 % 36 68 617
50 % 36 145 222
40 % 36 145 248
30 % 44 444 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55536
95 % 1 1 38764
90 % 1 1 36937
70 % 36 68 611
50 % 36 140 233
40 % 36 140 260
30 % 36 140 272
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 504
70 % 36 74 547
50 % 36 74 631
40 % 36 74 677
30 % 43 433 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 473
90 % 36 74 502
70 % 36 74 544
50 % 36 76 610
40 % 36 76 653
30 % 36 78 639
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 541
90 % 36 68 570
70 % 36 68 619
50 % 36 70 681
40 % 36 70 726
30 % 36 70 732
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1991
95 % 36 68 539
90 % 36 68 567
70 % 36 68 616
50 % 36 68 707
40 % 36 70 723
30 % 36 71 713
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 366
95 % 36 68 543
90 % 36 68 573
70 % 36 68 622
50 % 36 70 683
40 % 36 70 728
30 % 36 71 716
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 374
95 % 36 68 537
90 % 36 68 565
70 % 36 68 614
50 % 36 68 705
40 % 36 68 745
30 % 36 144 259
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 510
70 % 36 74 554
50 % 36 76 613
40 % 36 78 631
30 % 43 371 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 478
90 % 36 74 508
70 % 36 74 552
50 % 36 149 219
40 % 36 149 242
30 % 36 149 253
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 348
95 % 34 70 518
90 % 34 70 545
70 % 34 70 592
50 % 34 70 684
40 % 34 70 729
30 % 34 70 733
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 327
95 % 36 74 481
90 % 36 74 511
70 % 36 74 555
50 % 36 74 637
40 % 36 74 682
30 % 36 74 682
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 538
90 % 36 68 566
70 % 36 68 615
50 % 36 68 706
40 % 36 70 721
30 % 36 71 712
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 368
95 % 36 68 545
90 % 36 68 575
70 % 36 68 624
50 % 36 68 710
40 % 36 68 749
30 % 36 68 754
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58749
95 % 3 5 13117
90 % 3 5 12880
70 % 3 5 12117
50 % 3 5 10840
40 % 3 5 9867
30 % 3 5 8579
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64836
95 % 1 1 44989
90 % 1 1 42850
70 % 3 21 2636
50 % 7 30 1772
40 % 7 98 369
30 % 26 121 320
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 546
90 % 36 68 576
70 % 36 68 625
50 % 36 69 696
40 % 36 69 739
30 % 36 69 746
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66192
95 % 36 68 547
90 % 36 68 577
70 % 36 68 626
50 % 36 142 228
40 % 36 142 257
30 % 36 142 266
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 544
90 % 36 68 574
70 % 36 68 623
50 % 36 68 709
40 % 36 68 748
30 % 36 139 275
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 361
95 % 36 68 536
90 % 36 68 564
70 % 36 68 613
50 % 36 68 704
40 % 36 144 250
30 % 44 439 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1968
95 % 36 68 534
90 % 36 68 562
70 % 36 68 610
50 % 36 140 232
40 % 36 142 256
30 % 36 142 264
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49105
95 % 36 74 466
90 % 36 74 496
70 % 36 74 540
50 % 36 74 624
40 % 36 149 237
30 % 36 149 248
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9175
95 % 36 74 469
90 % 36 74 499
70 % 36 74 543
50 % 36 74 627
40 % 36 76 652
30 % 36 77 647
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 474
90 % 36 74 503
70 % 36 74 545
50 % 36 74 629
40 % 37 150 236
30 % 37 150 247
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2000
95 % 3 21 2587
90 % 36 68 569
70 % 36 68 618
50 % 51 98 344
40 % 58 112 314
30 % 58 114 325
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57705
95 % 1 1 39976
90 % 1 7 9334
70 % 3 27 1944
50 % 36 74 630
40 % 36 79 619
30 % 36 79 629
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 550
50 % 36 74 634
40 % 37 77 643
30 % 37 78 642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 13 K 50S ribosomal protein L14P 2238
2 1VQO 13 K 50S ribosomal protein L14P 2238
3 1VQ8 13 K 50S ribosomal protein L14P 2238
4 1S72 13 K 50S ribosomal protein L14P 2238
5 1JJ2 12 J RIBOSOMAL PROTEIN L14 2238
6 1YHQ 13 K 50S ribosomal protein L14P 2238
7 1VQP 13 K 50S ribosomal protein L14P 2238
8 1VQM 13 K 50S ribosomal protein L14P 2238
9 3CC2 11 K 50S ribosomal protein L14P 2238
10 1VQL 13 K 50S ribosomal protein L14P 2238
11 1VQK 13 K 50S ribosomal protein L14P 2238
12 1VQN 14 K 50S ribosomal protein L14P 2238
13 1YIJ 13 K 50S ribosomal protein L14P 2238
14 1YI2 13 K 50S ribosomal protein L14P 2238
15 1VQ9 13 K 50S ribosomal protein L14P 2238
16 1VQ7 13 K 50S ribosomal protein L14P 2238
17 3CCM 11 K 50S ribosomal protein L14P 2238
18 1VQ5 13 K 50S ribosomal protein L14P 2238
19 3CCJ 11 K 50S ribosomal protein L14P 2238
20 3CC7 11 K 50S ribosomal protein L14P 2238
21 1YIT 17 K 50S RIBOSOMAL PROTEIN L14P 2238
22 3CCE 11 K 50S ribosomal protein L14P 2238
23 3G6E 12 K 50S ribosomal protein L14P 2238
24 3CPW 12 J 50S ribosomal protein L14P 2238
25 3CCU 11 K 50S ribosomal protein L14P 2238
26 1VQ6 14 K 50S ribosomal protein L14P 2238
27 1M90 13 L RIBOSOMAL PROTEIN L14 2238
28 3CCL 11 K 50S ribosomal protein L14P 2238
29 1YJW 17 K 50S RIBOSOMAL PROTEIN L14P 2238
30 1YJ9 13 K 50S ribosomal protein L14P 2238
31 3CD6 11 K 50S ribosomal protein L14P 2238
32 3CCV 11 K 50S ribosomal protein L14P 2238
33 3CC4 11 K 50S ribosomal protein L14P 2238
34 2OTL 12 K 50S ribosomal protein L14P 2238
35 3G71 12 K 50S ribosomal protein L14P 2238
36 1FFK 10 H RIBOSOMAL PROTEIN L14 2238
37 1VQ4 13 K 50S ribosomal protein L14P 2238
38 1YJN 13 K 50S ribosomal protein L14P 2238
39 3CMA 11 K 50S ribosomal protein L14P 2238
40 3CCS 11 K 50S ribosomal protein L14P 2238
41 3CCQ 11 K 50S ribosomal protein L14P 2238
42 3I56 11 K 50S ribosomal protein L14P 2238
43 3CCR 11 K 50S ribosomal protein L14P 2238
44 2OTJ 12 K 50S ribosomal protein L14P 2238
45 4V88 59 BV, DV 60S ribosomal protein L23-A 4932
46 1KQS 14 J RIBOSOMAL PROTEIN L14 2238
47 3OW2 12 J 50S ribosomal protein L14P 2238
48 4U4R 59 N3, n3 60S ribosomal protein L23-A 4932
49 3CXC 13 J RIBOSOMAL PROTEIN L14 2238
50 1QVG 13 J 50S ribosomal protein L14P 2238
51 3CME 11 K 50S ribosomal protein L14P 2238
52 2QEX 12 K 50S ribosomal protein L14P 2238
53 4U3U 59 N3, n3 60S ribosomal protein L23-A 4932
54 1KC8 12 L RIBOSOMAL PROTEIN L14 2238
55 4U3M 59 N3, n3 60S ribosomal protein L23-A 4932
56 1N8R 12 L 50S ribosomal protein L14P 2238
57 4U3N 59 N3, n3 60S ribosomal protein L23-A 4932
58 1Q81 13 L 50S ribosomal protein L14P 2238
59 1Q82 13 L 50S ribosomal protein L14P 2238
60 1QVF 13 J 50S ribosomal protein L14P 2238
61 4U52 59 N3, n3 60S ribosomal protein L23-A 4932
62 4U4Q 59 N3, n3 60S ribosomal protein L23-A 4932
63 1NJI 12 L 50S ribosomal protein L14P 2238
64 4U6F 59 N3, n3 60S ribosomal protein L23-A 4932
65 4U4U 59 N3, n3 60S ribosomal protein L23-A 4932
66 1K73 12 L RIBOSOMAL PROTEIN L14 2238
67 4U4Z 59 N3, n3 60S ribosomal protein L23-A 4932
68 4U4Y 59 N3, n3 60S ribosomal protein L23-A 4932
69 4U4N 59 N3, n3 60S ribosomal protein L23-A 4932
70 4U55 59 N3, n3 60S ribosomal protein L23-A 4932
71 1K9M 12 L RIBOSOMAL PROTEIN L14 2238
72 1KD1 12 L RIBOSOMAL PROTEIN L14 2238
73 3I55 12 K 50S ribosomal protein L14P 2238
74 5I4L 59 N3, n3 60S ribosomal protein L23-A 4932
75 4U51 59 N3, n3 60S ribosomal protein L23-A 4932
76 1K8A 12 L RIBOSOMAL PROTEIN L14 2238
77 4U53 59 N3, n3 60S ribosomal protein L23-A 4932
78 1Q86 13 L 50S ribosomal protein L14P 2238
79 4U50 59 N3, n3 60S ribosomal protein L23-A 4932
80 1M1K 12 L RIBOSOMAL PROTEIN L14 2238
81 3G4S 12 K 50S ribosomal protein L14P 2238
82 1W2B 15 J 50S RIBOSOMAL PROTEIN L14P 2238
83 4U56 59 N3, n3 60S ribosomal protein L23-A 4932
84 2QA4 13 K 50S ribosomal protein L14P 2238
85 1Q7Y 13 L 50S ribosomal protein L14P 2238
86 5FCJ 59 N3, n3 60S ribosomal protein L23-A 4932
87 4U4O 59 N3, n3 60S ribosomal protein L23-A 4932
88 4V8P 31 BJ, CJ, EJ, GJ RPL23 5911
89 5FCI 59 N3, n3 60S ribosomal protein L23-A 4932
90 5DC3 59 N3, n3 60S ribosomal protein L23-A 4932
91 4V7R 50 BU, DU 60S ribosomal protein L23 4932
92 5IT7 24 VV KLLA0E06997p 28985
93 3JCT 22 V 60S ribosomal protein L23-A 4932
94 3JCS 18 J ribosomal protein L14 5661
95 5GAK 2 X 60S ribosomal protein L23-A 4932
96 5FL8 22 V 60S ribosomal protein L23-A 4932
97 5APN 24 V 60S ribosomal protein L23-A 4932
98 5APO 24 V 60S ribosomal protein L23-A 4932
99 3JBN 58 AM 60S ribosomal protein uL14 5833
100 3JBO 59 AM 60S ribosomal protein uL14 5833
101 3JBP 58 AM 60S ribosomal protein uL14 5833
102 5AN9 5 E 60S RIBOSOMAL PROTEIN L23 44689
103 5ANB 5 E 60S RIBOSOMAL PROTEIN L23 44689
104 5ANC 5 E 60S RIBOSOMAL PROTEIN L23 44689
105 3JAN 15 V Ribosomal protein uL14 SEE REMARK 999 9986
106 3JAJ 15 V Ribosomal protein uL14 SEE REMARK 999 9986
107 3JAG 21 V uL14 9986
108 3JAH 21 V uL14 9986
109 3JAI 21 V uL14 9986
110 4UG0 24 LV 60S RIBOSOMAL PROTEIN L23 9606
111 5AJ0 24 AV 60S ribosomal protein L23 9606
112 3J92 21 V uL14 9986
113 4D67 21 V 60S RIBOSOMAL PROTEIN L23 9986
114 4D5Y 21 V 60S RIBOSOMAL PROTEIN UL14 9986
115 4V3P 41 LM Ribosomal Pr 117 4565
116 3J7O 24 V Ribosomal protein uL14 9823
117 3J7P 25 V Ribosomal protein uL14 9823
118 3J7Q 24 V Ribosomal protein uL14 9823
119 3J7R 24 V Ribosomal protein uL14 9823
120 4UJC 27 BV 60S RIBOSOMAL PROTEIN L23 9986
121 4UJD 24 AV 60S RIBOSOMAL PROTEIN L23 9986
122 3J79 13 M 60S ribosomal protein uL14 5833
123 3J77 23 73 60S ribosomal protein L23 4932
124 3J78 23 73 60S ribosomal protein L23 4932
125 3J6X 25 63 60S ribosomal protein L23 4932
126 3J6Y 25 63 60S ribosomal protein L23 4932
127 4UJE 58 CV 60S RIBOSOMAL PROTEIN L23 9986
128 4V91 24 V UL14 RIBOSOMAL PROTEIN UL14 28985
129 4V7F 15 L 60S ribosomal protein L23 4932
130 4V7E 44 CV 60S ribosomal protein L14 4565
131 4V8Y 56 BV 60S RIBOSOMAL PROTEIN L23-A 4932
132 4V8Z 56 BV 60S RIBOSOMAL PROTEIN L23-A 4932
133 4V4N 56 AJ 50S ribosomal protein L14P SEE REMARK 999 2190
134 4V6W 43 CV 60S ribosomal protein L23 7227
135 4V6X 43 CV 60S ribosomal protein L23 9606
136 4V8M 56 BW 60S RIBOSOMAL PROTEIN L23, PUTATIVE 185431
137 4V6U 65 BJ 50S ribosomal protein L14P 2261
138 4V8T 22 V 60S RIBOSOMAL PROTEIN L23-A 4932
139 4ADX 21 K RPL14 145262
140 3J16 11 I 40S ribosomal protein S24E 4932
141 4V6I 42 BM 60S ribosomal protein rpL23 (L14p) 4932
142 2X7N 3 C 60S RIBOSOMAL PROTEIN L23 RESIDUES 6-137 4932
143 4V7H 42 BR 60S ribosomal protein L23 5541
144 4V5Z 63 Bk 60S Ribosomal protein L23 9612
145 4V4B 37 BR 60S ribosomal protein L23 4932