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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 263 Members. Sequence cutoff: 40% Cluster size: 122 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 13 K 50S ribosomal protein L14P 272569  
2 1VQO 13 K 50S ribosomal protein L14P 2238  
3 1VQ8 13 K 50S ribosomal protein L14P 2238  
4 1S72 13 K 50S ribosomal protein L14P 2238  
5 1JJ2 12 J RIBOSOMAL PROTEIN L14 2238  
6 1YHQ 13 K 50S ribosomal protein L14P 2238  
7 1VQP 13 K 50S ribosomal protein L14P 2238  
8 1VQM 13 K 50S ribosomal protein L14P 2238  
9 3CC2 11 K 50S ribosomal protein L14P 2238  
10 1VQL 13 K 50S ribosomal protein L14P 2238  
11 1VQK 13 K 50S ribosomal protein L14P 2238  
12 1VQN 14 K 50S ribosomal protein L14P 2238  
13 1YIJ 13 K 50S ribosomal protein L14P 2238  
14 1YI2 13 K 50S ribosomal protein L14P 2238  
15 1VQ9 13 K 50S ribosomal protein L14P 2238  
16 1VQ7 13 K 50S ribosomal protein L14P 2238  
17 3CCM 11 K 50S ribosomal protein L14P 272569  
18 1VQ5 13 K 50S ribosomal protein L14P 2238  
19 3CCJ 11 K 50S ribosomal protein L14P 272569  
20 3CC7 11 K 50S ribosomal protein L14P 2238  
21 1YIT 17 K 50S RIBOSOMAL PROTEIN L14P 2238  
22 3CCE 11 K 50S ribosomal protein L14P 272569  
23 3G6E 12 K 50S ribosomal protein L14P 2238  
24 3CPW 12 J 50S ribosomal protein L14P 2238  
25 3CCU 11 K 50S ribosomal protein L14P 272569  
26 1VQ6 14 K 50S ribosomal protein L14P 2238  
27 1M90 13 L RIBOSOMAL PROTEIN L14 2238  
28 3CCL 11 K 50S ribosomal protein L14P 272569  
29 1YJW 17 K 50S RIBOSOMAL PROTEIN L14P 2238  
30 1YJ9 13 K 50S ribosomal protein L14P 2238  
31 3CD6 11 K 50S ribosomal protein L14P 272569  
32 3CCV 11 K 50S ribosomal protein L14P 272569  
33 3CC4 11 K 50S ribosomal protein L14P 272569  
34 2OTL 12 K 50S ribosomal protein L14P 2238  
35 3G71 12 K 50S ribosomal protein L14P 2238  
36 1FFK 10 H RIBOSOMAL PROTEIN L14 2238  
37 1VQ4 13 K 50S ribosomal protein L14P 2238  
38 1YJN 13 K 50S ribosomal protein L14P 2238  
39 3CMA 11 K 50S ribosomal protein L14P 2238  
40 3CCS 11 K 50S ribosomal protein L14P 272569  
41 3CCQ 11 K 50S ribosomal protein L14P 272569  
42 3I56 11 K 50S ribosomal protein L14P 2238  
43 3CCR 11 K 50S ribosomal protein L14P 272569  
44 2OTJ 12 K 50S ribosomal protein L14P 2238  
45 4V88 59 BV, DV 60S ribosomal protein L23-A 559292  
46 1KQS 14 J RIBOSOMAL PROTEIN L14 2238  
47 3OW2 12 J 50S ribosomal protein L14P 2238  
48 4U4R 59 N3, n3 60S ribosomal protein L23-A 559292  
49 3CXC 13 J RIBOSOMAL PROTEIN L14 2238  
50 1QVG 13 J 50S ribosomal protein L14P 2238  
51 3CME 11 K 50S ribosomal protein L14P 2238  
52 2QEX 12 K 50S ribosomal protein L14P 2238  
53 4U3U 59 N3, n3 60S ribosomal protein L23-A 559292  
54 1KC8 12 L RIBOSOMAL PROTEIN L14 2238  
55 4U3M 59 N3, n3 60S ribosomal protein L23-A 559292  
56 1N8R 12 L 50S ribosomal protein L14P 2238  
57 4U3N 59 N3, n3 60S ribosomal protein L23-A 559292  
58 1Q81 13 L 50S ribosomal protein L14P 2238  
59 1Q82 13 L 50S ribosomal protein L14P 2238  
60 1QVF 13 J 50S ribosomal protein L14P 2238  
61 4U52 59 N3, n3 60S ribosomal protein L23-A 559292  
62 4U4Q 59 N3, n3 60S ribosomal protein L23-A 559292  
63 1NJI 12 L 50S ribosomal protein L14P 2238  
64 4U6F 59 N3, n3 60S ribosomal protein L23-A 559292  
65 4U4U 59 N3, n3 60S ribosomal protein L23-A 559292  
66 1K73 12 L RIBOSOMAL PROTEIN L14 2238  
67 4U4Z 59 N3, n3 60S ribosomal protein L23-A 559292  
68 4U4Y 59 N3, n3 60S ribosomal protein L23-A 559292  
69 4U4N 59 N3, n3 60S ribosomal protein L23-A 559292  
70 4U55 59 N3, n3 60S ribosomal protein L23-A 559292  
71 1K9M 12 L RIBOSOMAL PROTEIN L14 2238  
72 1KD1 12 L RIBOSOMAL PROTEIN L14 2238  
73 3I55 12 K 50S ribosomal protein L14P 2238  
74 4U51 59 N3, n3 60S ribosomal protein L23-A 559292  
75 1K8A 12 L RIBOSOMAL PROTEIN L14 2238  
76 4U53 59 N3, n3 60S ribosomal protein L23-A 559292  
77 1Q86 13 L 50S ribosomal protein L14P 2238  
78 4U50 59 N3, n3 60S ribosomal protein L23-A 559292  
79 1M1K 12 L RIBOSOMAL PROTEIN L14 2238  
80 3G4S 12 K 50S ribosomal protein L14P 2238  
81 1W2B 15 J 50S RIBOSOMAL PROTEIN L14P 2238  
82 4U56 59 N3, n3 60S ribosomal protein L23-A 559292  
83 2QA4 13 K 50S ribosomal protein L14P 2238  
84 1Q7Y 13 L 50S ribosomal protein L14P 2238  
85 4U4O 59 N3, n3 60S ribosomal protein L23-A 559292  
86 4V8P 31 BJ, CJ, EJ, GJ RPL23 5911  
87 4V7R 50 BU, DU 60S ribosomal protein L23 4932  
88 3J92 21 V uL14 9986  
89 4D67 21 V 60S RIBOSOMAL PROTEIN L23 9986  
90 4D5Y 21 V 60S RIBOSOMAL PROTEIN UL14 9986  
91 4V3P 41 LM Ribosomal Pr 117 4565  
92 3J7O 24 V Ribosomal protein uL14 9823  
93 3J7P 25 V Ribosomal protein uL14 9823  
94 3J7Q 24 V Ribosomal protein uL14 9823  
95 3J7R 24 V Ribosomal protein uL14 9823  
96 4UJC 27 BV 60S RIBOSOMAL PROTEIN L23 9986  
97 4UJD 24 AV 60S RIBOSOMAL PROTEIN L23 9986  
98 3J79 13 M 60S ribosomal protein uL14 36329  
99 3J77 23 73 60S ribosomal protein L23 4932  
100 3J78 23 73 60S ribosomal protein L23 4932  
101 3J6X 25 63 60S ribosomal protein L23 580240  
102 3J6Y 25 63 60S ribosomal protein L23 580240  
103 4UJE 58 CV 60S RIBOSOMAL PROTEIN L23 9986  
104 4V91 24 V UL14 RIBOSOMAL PROTEIN UL14 28985  
105 4V7F 15 L 60S ribosomal protein L23 4932  
106 4V7E 44 CV 60S ribosomal protein L14 4565  
107 4V8Y 56 BV 60S RIBOSOMAL PROTEIN L23-A 4932  
108 4V8Z 56 BV 60S RIBOSOMAL PROTEIN L23-A 4932  
109 4V4N 56 AJ 50S ribosomal protein L14P SEE REMARK 999 2190  
110 4V6W 43 CV 60S ribosomal protein L23 7227  
111 4V6X 43 CV 60S ribosomal protein L23 9606  
112 4V8M 56 BW 60S RIBOSOMAL PROTEIN L23, PUTATIVE 185431  
113 4V6U 65 BJ 50S ribosomal protein L14P 186497  
114 4V8T 22 V 60S RIBOSOMAL PROTEIN L23-A 559292  
115 4ADX 21 K RPL14 187420  
116 3J16 11 I 40S ribosomal protein S24E 4932  
117 4V6I 42 BM 60S ribosomal protein rpL23 (L14p) 4932  
118 2X7N 3 C 60S RIBOSOMAL PROTEIN L23 RESIDUES 6-137 4932  
119 4V7H 42 BR 60S ribosomal protein L23 5541  
120 4V5Z 63 Bk 60S Ribosomal protein L23 9615  
121 4V4B 37 BR 60S ribosomal protein L23 4932  
122 5AJ0 24 AV 60S ribosomal protein L23 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 670
95% 36 68 475
90% 36 68 498
70% 36 68 538
50% 36 122 239
40% 36 122 263
30% 41 343 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49544
95% 1 1 34729
90% 1 1 33184
70% 36 68 531
50% 36 120 245
40% 36 120 269
30% 36 120 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 417
90% 36 74 442
70% 36 74 473
50% 36 74 523
40% 36 74 564
30% 40 335 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 415
90% 36 74 440
70% 36 74 470
50% 36 76 499
40% 36 76 539
30% 36 78 523
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 477
90% 36 68 501
70% 36 68 541
50% 36 70 581
40% 36 70 616
30% 36 70 617
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1716
95% 36 68 473
90% 36 68 496
70% 36 68 536
50% 36 68 616
40% 36 70 615
30% 36 71 594
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 479
90% 36 68 503
70% 36 68 543
50% 36 70 584
40% 36 70 620
30% 36 71 597
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 338
95% 36 68 471
90% 36 68 494
70% 36 68 534
50% 36 68 613
40% 36 68 647
30% 36 123 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 420
90% 36 74 445
70% 36 74 477
50% 36 76 500
40% 36 78 520
30% 40 293 68
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 419
90% 36 74 444
70% 36 74 476
50% 36 129 221
40% 36 129 247
30% 36 129 263
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 314
95% 34 70 456
90% 34 70 477
70% 34 70 513
50% 34 70 585
40% 34 70 621
30% 34 70 619
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 421
90% 36 74 446
70% 36 74 478
50% 36 74 526
40% 36 74 566
30% 36 74 560
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 472
90% 36 68 495
70% 36 68 535
50% 36 68 614
40% 36 70 614
30% 36 71 593
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 481
90% 36 68 505
70% 36 68 545
50% 36 68 620
40% 36 68 652
30% 36 68 647
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52539
95% 3 5 11587
90% 3 5 11397
70% 3 5 10780
50% 3 5 9682
40% 3 5 8839
30% 3 5 7731
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58247
95% 1 1 40593
90% 1 1 38787
70% 3 21 2318
50% 7 30 1577
40% 7 78 410
30% 26 101 335
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 483
90% 36 68 507
70% 36 68 547
50% 36 69 603
40% 36 69 639
30% 36 69 634
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59545
95% 36 68 484
90% 36 68 508
70% 36 68 549
50% 36 122 240
40% 36 122 264
30% 36 122 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 480
90% 36 68 504
70% 36 68 544
50% 36 68 619
40% 36 68 651
30% 36 121 284
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 470
90% 36 68 493
70% 36 68 533
50% 36 68 611
40% 36 121 267
30% 41 338 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1699
95% 36 68 468
90% 36 68 491
70% 36 68 530
50% 36 120 244
40% 36 122 262
30% 36 122 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43724
95% 36 74 409
90% 36 74 434
70% 36 74 466
50% 36 74 516
40% 36 126 254
30% 36 126 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8034
95% 36 74 413
90% 36 74 438
70% 36 74 469
50% 36 74 518
40% 36 76 537
30% 36 77 530
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 416
90% 36 74 441
70% 36 74 471
50% 36 74 521
40% 36 127 253
30% 36 127 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1727
95% 3 21 2266
90% 36 68 500
70% 36 68 540
50% 51 95 310
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51553
95% 1 1 35854
90% 1 7 8244
70% 3 27 1705
50% 36 74 522
40% 36 79 507
30% 36 79 515
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 418
90% 36 74 443
70% 36 74 474
50% 36 74 525
40% 37 77 530
30% 37 78 525
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.