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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 561
95% 36 68 454
90% 36 68 478
70% 36 68 510
50% 36 132 246
40% 36 132 272
30% 39 443 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47060
95% 1 1 33055
90% 1 1 31630
70% 36 68 502
50% 36 130 253
40% 36 130 279
30% 36 130 304
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 280
95% 36 74 397
90% 36 74 423
70% 36 74 449
50% 36 74 496
40% 36 74 529
30% 38 435 53
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 278
95% 36 74 395
90% 36 74 421
70% 36 74 447
50% 36 76 479
40% 36 76 510
30% 36 78 502
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 456
90% 36 68 481
70% 36 68 513
50% 36 70 535
40% 36 70 563
30% 36 70 567
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1619
95% 36 68 452
90% 36 68 476
70% 36 68 508
50% 36 68 558
40% 36 70 562
30% 36 71 552
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 458
90% 36 68 483
70% 36 68 515
50% 36 70 537
40% 36 70 566
30% 36 71 554
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 331
95% 36 68 450
90% 36 68 474
70% 36 68 506
50% 36 68 555
40% 36 68 588
30% 36 133 293
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 400
90% 36 74 426
70% 36 74 452
50% 36 76 480
40% 36 78 492
30% 38 383 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 399
90% 36 74 425
70% 36 74 451
50% 36 139 232
40% 36 139 258
30% 36 139 272
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 305
95% 34 70 434
90% 34 70 455
70% 34 70 485
50% 34 70 539
40% 34 70 568
30% 34 70 569
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 401
90% 36 74 427
70% 36 74 453
50% 36 74 498
40% 36 74 530
30% 36 74 531
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 451
90% 36 68 475
70% 36 68 507
50% 36 68 556
40% 36 70 561
30% 36 71 551
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 323
95% 36 68 460
90% 36 68 485
70% 36 68 517
50% 36 68 562
40% 36 68 593
30% 36 68 589
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49973
95% 3 5 11072
90% 3 5 10892
70% 3 5 10307
50% 3 5 9257
40% 3 5 8444
30% 3 5 7414
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 55518
95% 1 1 38769
90% 1 1 37101
70% 3 21 2199
50% 7 30 1495
40% 7 85 441
30% 26 108 353
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 462
90% 36 68 487
70% 36 68 519
50% 36 69 550
40% 36 69 582
30% 36 69 582
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56777
95% 36 68 463
90% 36 68 488
70% 36 68 520
50% 36 132 247
40% 36 132 273
30% 36 132 297
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 459
90% 36 68 484
70% 36 68 516
50% 36 68 561
40% 36 68 592
30% 36 131 301
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 315
95% 36 68 449
90% 36 68 473
70% 36 68 505
50% 36 68 554
40% 36 125 295
30% 39 432 55
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1602
95% 35 67 467
90% 35 67 492
70% 35 67 526
50% 35 123 264
40% 35 125 294
30% 35 125 311
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41480
95% 36 74 390
90% 36 74 417
70% 36 74 444
50% 36 74 491
40% 36 130 278
30% 36 130 302
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7578
95% 36 74 393
90% 36 74 419
70% 36 74 446
50% 36 74 493
40% 36 76 509
30% 36 77 508
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 279
95% 36 74 396
90% 36 74 422
70% 36 74 448
50% 36 74 494
40% 36 136 265
30% 36 136 287
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1629
95% 3 21 2142
90% 36 68 480
70% 36 68 512
50% 51 97 289
40% 57 106 280
30% 57 108 296
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49009
95% 1 1 34152
90% 1 7 7870
70% 3 27 1621
50% 36 74 495
40% 36 78 488
30% 36 78 504
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 281
95% 36 74 398
90% 36 74 424
70% 36 74 450
50% 36 74 497
40% 37 77 501
30% 37 78 505
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.