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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 547
95% 36 68 449
90% 36 68 471
70% 36 68 502
50% 36 105 320
40% 36 105 344
30% 37 402 56
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46577
95% 1 1 32715
90% 1 1 31302
70% 36 68 495
50% 36 103 330
40% 36 103 353
30% 36 103 364
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 276
95% 36 74 395
90% 36 74 419
70% 36 74 444
50% 36 74 493
40% 36 74 523
30% 36 394 62
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 274
95% 36 74 393
90% 36 74 417
70% 36 74 442
50% 36 76 476
40% 36 76 504
30% 36 78 499
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 312
95% 36 68 451
90% 36 68 474
70% 36 68 505
50% 36 70 531
40% 36 70 557
30% 36 70 562
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1531
95% 36 68 447
90% 36 68 469
70% 36 68 500
50% 36 68 556
40% 36 70 556
30% 36 71 547
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 315
95% 36 68 453
90% 36 68 476
70% 36 68 507
50% 36 70 533
40% 36 70 560
30% 36 71 549
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 326
95% 36 68 445
90% 36 68 467
70% 36 68 498
50% 36 68 553
40% 36 68 584
30% 36 106 349
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 281
95% 36 74 398
90% 36 74 422
70% 36 74 447
50% 36 76 477
40% 36 78 486
30% 36 369 73
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 280
95% 36 74 397
90% 36 74 421
70% 36 74 446
50% 36 112 286
40% 36 112 310
30% 36 112 327
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 302
95% 34 70 429
90% 34 70 449
70% 34 70 478
50% 34 70 534
40% 34 70 561
30% 34 70 563
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 399
90% 36 74 423
70% 36 74 448
50% 36 74 495
40% 36 74 525
30% 36 74 527
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 310
95% 36 68 446
90% 36 68 468
70% 36 68 499
50% 36 68 554
40% 36 70 555
30% 36 71 546
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 317
95% 36 68 455
90% 36 68 478
70% 36 68 509
50% 36 68 560
40% 36 68 589
30% 36 68 585
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49468
95% 3 5 10959
90% 3 5 10788
70% 3 5 10213
50% 3 5 9173
40% 3 5 8374
30% 3 5 7360
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 54982
95% 1 1 38385
90% 1 1 36737
70% 3 21 2125
50% 7 30 1448
40% 7 58 696
30% 26 81 477
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 457
90% 36 68 480
70% 36 68 511
50% 36 69 546
40% 36 69 576
30% 36 69 576
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56239
95% 36 68 458
90% 36 68 481
70% 36 68 512
50% 36 105 323
40% 36 105 346
30% 36 105 357
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 454
90% 36 68 477
70% 36 68 508
50% 36 68 559
40% 36 68 588
30% 36 104 361
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 309
95% 36 68 444
90% 36 68 466
70% 36 68 497
50% 36 68 552
40% 36 104 349
30% 37 397 61
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1516
95% 35 67 462
90% 35 67 485
70% 35 67 518
50% 35 102 332
40% 35 104 347
30% 35 104 358
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41062
95% 36 74 388
90% 36 74 413
70% 36 74 439
50% 36 74 488
40% 36 109 318
30% 36 109 332
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7493
95% 36 74 391
90% 36 74 415
70% 36 74 441
50% 36 74 490
40% 36 76 503
30% 36 77 505
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 275
95% 36 74 394
90% 36 74 418
70% 36 74 443
50% 36 74 491
40% 36 109 321
30% 36 109 335
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1542
95% 3 21 2053
90% 36 68 473
70% 36 68 504
50% 51 97 279
40% 57 106 271
30% 57 108 290
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48514
95% 1 1 33800
90% 1 7 7789
70% 3 27 1544
50% 36 74 492
40% 36 78 483
30% 36 78 501
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 277
95% 36 74 396
90% 36 74 420
70% 36 74 445
50% 36 74 494
40% 37 77 495
30% 37 78 502
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.