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An Information Portal to 110988 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 682
95% 36 68 486
90% 36 68 509
70% 36 68 555
50% 36 125 235
40% 36 125 262
30% 41 364 44
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50499
95% 1 1 35383
90% 1 1 33795
70% 36 68 547
50% 36 123 242
40% 36 123 271
30% 36 123 286
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 421
90% 36 74 448
70% 36 74 480
50% 36 74 542
40% 36 74 582
30% 40 356 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 419
90% 36 74 446
70% 36 74 477
50% 36 76 515
40% 36 76 559
30% 36 78 538
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 488
90% 36 68 512
70% 36 68 558
50% 36 70 599
40% 36 70 636
30% 36 70 635
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1764
95% 36 68 484
90% 36 68 507
70% 36 68 553
50% 36 68 630
40% 36 70 635
30% 36 71 618
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 489
90% 36 68 513
70% 36 68 559
50% 36 70 601
40% 36 70 639
30% 36 71 620
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 342
95% 36 68 482
90% 36 68 505
70% 36 68 550
50% 36 68 627
40% 36 68 660
30% 36 126 275
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 298
95% 36 74 425
90% 36 74 452
70% 36 74 485
50% 36 76 522
40% 36 78 534
30% 40 311 59
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 423
90% 36 74 450
70% 36 74 483
50% 36 132 223
40% 36 132 248
30% 36 132 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 318
95% 34 70 464
90% 34 70 486
70% 34 70 526
50% 34 70 602
40% 34 70 640
30% 34 70 637
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 300
95% 36 74 426
90% 36 74 453
70% 36 74 486
50% 36 74 550
40% 36 74 588
30% 36 74 582
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 483
90% 36 68 506
70% 36 68 551
50% 36 68 628
40% 36 70 634
30% 36 71 617
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 491
90% 36 68 515
70% 36 68 561
50% 36 68 637
40% 36 68 666
30% 36 68 663
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53528
95% 3 5 11834
90% 3 5 11637
70% 3 5 10981
50% 3 5 9860
40% 3 5 9005
30% 3 5 7868
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59287
95% 1 1 41282
90% 1 1 39432
70% 3 21 2373
50% 7 30 1605
40% 7 81 405
30% 26 104 332
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 335
95% 36 68 493
90% 36 68 517
70% 36 68 564
50% 36 69 619
40% 36 69 654
30% 36 69 650
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60594
95% 36 68 494
90% 36 68 518
70% 36 68 565
50% 36 125 236
40% 36 125 263
30% 36 125 278
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 490
90% 36 68 514
70% 36 68 560
50% 36 68 636
40% 36 68 665
30% 36 124 282
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 481
90% 36 68 504
70% 36 68 549
50% 36 68 626
40% 36 124 268
30% 41 359 49
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1743
95% 36 68 478
90% 36 68 501
70% 36 68 546
50% 36 123 241
40% 36 125 260
30% 36 125 277
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44590
95% 36 74 413
90% 36 74 440
70% 36 74 473
50% 36 74 536
40% 36 129 252
30% 36 129 267
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8230
95% 36 74 416
90% 36 74 443
70% 36 74 476
50% 36 74 538
40% 36 76 555
30% 36 77 549
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 420
90% 36 74 447
70% 36 74 478
50% 36 74 540
40% 36 130 250
30% 36 130 264
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1775
95% 3 21 2320
90% 36 68 511
70% 36 68 557
50% 51 95 321
40% 58 105 298
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52538
95% 1 1 36518
90% 1 7 8412
70% 3 27 1744
50% 36 74 541
40% 36 79 520
30% 36 79 529
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 422
90% 36 74 449
70% 36 74 482
50% 36 74 544
40% 37 77 547
30% 37 78 541
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.