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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 551
95% 36 68 454
90% 36 68 478
70% 36 68 510
50% 36 105 324
40% 36 105 346
30% 39 415 54
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46959
95% 1 1 32990
90% 1 1 31568
70% 36 68 502
50% 36 103 335
40% 36 103 357
30% 36 103 368
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 279
95% 36 74 397
90% 36 74 423
70% 36 74 448
50% 36 74 496
40% 36 74 527
30% 38 407 61
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 277
95% 36 74 395
90% 36 74 421
70% 36 74 446
50% 36 76 479
40% 36 76 508
30% 36 78 502
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 456
90% 36 68 481
70% 36 68 513
50% 36 70 535
40% 36 70 562
30% 36 70 567
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1546
95% 36 68 452
90% 36 68 476
70% 36 68 508
50% 36 68 558
40% 36 70 561
30% 36 71 552
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 458
90% 36 68 483
70% 36 68 515
50% 36 70 537
40% 36 70 565
30% 36 71 554
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 331
95% 36 68 450
90% 36 68 474
70% 36 68 506
50% 36 68 555
40% 36 68 586
30% 36 106 352
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 400
90% 36 74 426
70% 36 74 451
50% 36 76 480
40% 36 78 490
30% 38 382 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 399
90% 36 74 425
70% 36 74 450
50% 36 112 288
40% 36 112 312
30% 36 112 328
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 305
95% 34 70 434
90% 34 70 455
70% 34 70 485
50% 34 70 538
40% 34 70 566
30% 34 70 568
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 401
90% 36 74 427
70% 36 74 452
50% 36 74 498
40% 36 74 529
30% 36 74 531
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 451
90% 36 68 475
70% 36 68 507
50% 36 68 556
40% 36 70 560
30% 36 71 551
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 323
95% 36 68 460
90% 36 68 485
70% 36 68 517
50% 36 68 562
40% 36 68 591
30% 36 68 588
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49872
95% 3 5 11050
90% 3 5 10871
70% 3 5 10289
50% 3 5 9240
40% 3 5 8429
30% 3 5 7404
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 55418
95% 1 1 38705
90% 1 1 37040
70% 3 21 2141
50% 7 30 1458
40% 7 58 703
30% 26 81 483
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 462
90% 36 68 487
70% 36 68 519
50% 36 69 550
40% 36 69 581
30% 36 69 582
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56677
95% 36 68 463
90% 36 68 488
70% 36 68 520
50% 36 105 327
40% 36 105 348
30% 36 105 360
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 459
90% 36 68 484
70% 36 68 516
50% 36 68 561
40% 36 68 590
30% 36 104 364
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 315
95% 36 68 449
90% 36 68 473
70% 36 68 505
50% 36 68 554
40% 36 104 352
30% 39 410 58
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1529
95% 35 67 467
90% 35 67 492
70% 35 67 526
50% 35 102 337
40% 35 104 350
30% 35 104 362
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41386
95% 36 74 390
90% 36 74 417
70% 36 74 443
50% 36 74 491
40% 36 109 319
30% 36 109 333
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7556
95% 36 74 393
90% 36 74 419
70% 36 74 445
50% 36 74 493
40% 36 76 507
30% 36 77 508
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 278
95% 36 74 396
90% 36 74 422
70% 36 74 447
50% 36 74 494
40% 36 109 322
30% 36 109 336
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1557
95% 3 21 2066
90% 36 68 480
70% 36 68 512
50% 51 97 281
40% 57 106 274
30% 57 108 293
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48908
95% 1 1 34087
90% 1 7 7852
70% 3 27 1556
50% 36 74 495
40% 36 78 487
30% 36 78 504
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 280
95% 36 74 398
90% 36 74 424
70% 36 74 449
50% 36 74 497
40% 37 77 499
30% 37 78 505
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.