Sequence Similarity Clusters for the Entities in PDB 1FE8

Entity #1 | Chains: A,B,C
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 4206
95 % 4 5 5015 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 4 5 5040
70 % 4 5 4916
50 % 4 5 4696
40 % 4 5 4453
30 % 4 5 4094
Entity #2 | Chains: H,I,J
IMMUNOGLOBULIN IGG RU5 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28880
95 % 1 1 24021 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 1 23204
70 % 774 2424 2
50 % 1601 5011 1
40 % 1601 5011 1
30 % 1827 5941 1
Entity #3 | Chains: L,M,N
IMMUNOGLOBULIN IGG RU5 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28866
95 % 1 1 24007 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 68 398
70 % 780 2474 1
50 % 1602 5011 1
40 % 1602 5011 1
30 % 1828 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures