Sequence Similarity Clusters for the Entities in PDB 1FE8

Entity #1 | Chains: A,B,C
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 4140
95 % 4 5 4946 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 4 5 4966
70 % 4 5 4844
50 % 4 5 4635
40 % 4 5 4406
30 % 4 5 4041
Entity #2 | Chains: H,I,J
IMMUNOGLOBULIN IGG RU5 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28521
95 % 1 1 23726 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 1 22924
70 % 754 2376 2
50 % 1560 4913 1
40 % 1560 4913 1
30 % 1747 5780 1
Entity #3 | Chains: L,M,N
IMMUNOGLOBULIN IGG RU5 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28507
95 % 1 1 23712 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 68 382
70 % 760 2426 1
50 % 1561 4913 1
40 % 1561 4913 1
30 % 1748 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures