Sequence Similarity Clusters for the Entities in PDB 1FE8

Entity #1 | Chains: A,B,C
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 3872
95 % 4 5 4644 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 4 5 4665
70 % 4 5 4575
50 % 4 5 4397
40 % 4 5 4180
30 % 4 5 3844
Entity #2 | Chains: H,I,J
IMMUNOGLOBULIN IGG RU5 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27035
95 % 1 1 22523 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 1 21792
70 % 690 2201 1
50 % 1429 4545 1
40 % 1429 4545 1
30 % 1596 5350 1
Entity #3 | Chains: L,M,N
IMMUNOGLOBULIN IGG RU5 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27021
95 % 1 1 22509 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 67 365
70 % 567 1845 2
50 % 1430 4545 1
40 % 1430 4545 1
30 % 1597 5350 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.