Sequence Similarity Clusters for the Entities in PDB 1FE8

Entity #1 | Chains: A,B,C
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 4029
95 % 4 5 4814 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 4 5 4833
70 % 4 5 4720
50 % 4 5 4524
40 % 4 5 4304
30 % 4 5 3957
Entity #2 | Chains: H,I,J
IMMUNOGLOBULIN IGG RU5 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27875
95 % 1 1 23219 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 1 22454
70 % 714 2280 2
50 % 1478 4713 1
40 % 1478 4713 1
30 % 1658 5567 1
Entity #3 | Chains: L,M,N
IMMUNOGLOBULIN IGG RU5 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27860
95 % 1 1 23204 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 67 373
70 % 720 2327 1
50 % 1479 4713 1
40 % 1479 4713 1
30 % 1659 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.