Sequence Similarity Clusters for the Entities in PDB 1FE8

Entity #1 | Chains: A,B,C
VON WILLEBRAND FACTOR protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 4501
95 % 4 5 4824 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 4 5 4864
70 % 4 5 4741
50 % 4 5 4544
40 % 4 5 4282
30 % 4 5 3865
Entity #2 | Chains: H,I,J
IMMUNOGLOBULIN IGG RU5 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28414
95 % 1 1 24867 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 1 1 24020
70 % 793 2511 2
50 % 1642 5180 1
40 % 1913 5834 1
30 % 2336 7269 1
Entity #3 | Chains: L,M,N
IMMUNOGLOBULIN IGG RU5 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28413
95 % 1 1 24866 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 19 68 401
70 % 798 2553 1
50 % 1643 5180 1
40 % 1914 5834 1
30 % 2337 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures