Sequence Similarity Clusters for the Entities in PDB 1FDQ

Entity #1 | Chains: A,B
FATTY ACID-BINDING PROTEIN, BRAIN protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 8996
95 % 2 4 8945 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 4 8852
70 % 2 4 8511
50 % 58 97 391
40 % 142 211 153
30 % 171 294 131

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures