Sequence Similarity Clusters for the Entities in PDB 1FDP

Entity #1 | Chains: A,B,C,D
PROENZYME OF COMPLEMENT FACTOR D protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 19 1092
95 % 18 26 1079 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.1
PDBFlex
90 % 18 26 1103
70 % 18 26 1140
50 % 19 27 1102
40 % 1243 1721 4
30 % 1336 1871 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures