Sequence Similarity Clusters for the Entities in PDB 1FDP

Entity #1 | Chains: A,B,C,D
PROENZYME OF COMPLEMENT FACTOR D protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 20 1081
95 % 18 27 1070 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.1
PDBFlex
90 % 18 27 1100
70 % 18 27 1129
50 % 19 28 1099
40 % 1334 1863 4
30 % 1343 1885 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures