Sequence Similarity Clusters for the Entities in PDB 1FDL

Entity #1 | Chains: L
IGG1-KAPPA D1.3 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61014
95 % 11 26 1041 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 16 37 775
70 % 1049 2362 1
50 % 2142 4781 1
40 % 2142 4781 1
30 % 2408 5635 1
Entity #2 | Chains: H
IGG1-KAPPA D1.3 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40666
95 % 2 2 31091 Flexibility: Medium
Max RMSD: 3.9, Avg RMSD: 3.9
PDBFlex
90 % 5 9 7771
70 % 1036 2311 2
50 % 2143 4781 1
40 % 2143 4781 1
30 % 2409 5635 1
Entity #3 | Chains: Y
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 590 663 3
95 % 641 716 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 653 733 5
70 % 864 953 7
50 % 870 961 8
40 % 899 995 11
30 % 899 995 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures