Sequence Similarity Clusters for the Entities in PDB 1FDL

Entity #1 | Chains: L
IGG1-KAPPA D1.3 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59380
95 % 11 26 1016 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 16 37 757
70 % 997 2264 1
50 % 2039 4587 1
40 % 2039 4587 1
30 % 2290 5392 1
Entity #2 | Chains: H
IGG1-KAPPA D1.3 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 39533
95 % 2 2 30211
90 % 5 9 7557
70 % 989 2222 2
50 % 2040 4587 1
40 % 2040 4587 1
30 % 2291 5392 1
Entity #3 | Chains: Y
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 575 646 3
95 % 626 699 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 638 716 5
70 % 846 933 7
50 % 852 941 7
40 % 881 975 11
30 % 881 975 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.