Sequence Similarity Clusters for the Entities in PDB 1FDL

Entity #1 | Chains: L
IGG1-KAPPA D1.3 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36582
95 % 11 26 1088 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 16 37 797
70 % 1136 2553 1
50 % 2324 5180 1
40 % 2665 5834 1
30 % 3234 7269 1
Entity #2 | Chains: H
IGG1-KAPPA D1.3 FAB (HEAVY CHAIN) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36583
95 % 2 2 31158 Flexibility: Medium
Max RMSD: 3.9, Avg RMSD: 3.9
PDBFlex
90 % 6 11 6344
70 % 1126 2511 2
50 % 2325 5180 1
40 % 2666 5834 1
30 % 3235 7269 1
Entity #3 | Chains: Y
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 642 717 3
95 % 658 734 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 670 751 5
70 % 883 974 7
50 % 889 982 8
40 % 919 1017 10
30 % 919 1017 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures