Sequence Similarity Clusters for the Entities in PDB 1FDH

Entity #1 | Chains: A,B
HEMOGLOBIN F (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 222 222 22
95 % 250 250 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 251 251 20
70 % 331 332 15
50 % 751 754 4
40 % 756 759 8
30 % 1214 1218 8
Entity #2 | Chains: G,H
HEMOGLOBIN F (DEOXY) (GAMMA CHAIN) protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13830
95 % 5 5 4985 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 5 5 5002
70 % 345 346 12
50 % 752 754 4
40 % 757 759 8
30 % 1215 1218 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures