Sequence Similarity Clusters for the Entities in PDB 1FDH

Entity #1 | Chains: A,B
HEMOGLOBIN F (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 214 214 22
95 % 245 245 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 246 246 21
70 % 326 327 15
50 % 741 744 4
40 % 746 749 8
30 % 1194 1198 8
Entity #2 | Chains: G,H
HEMOGLOBIN F (DEOXY) (GAMMA CHAIN) protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 13552
95 % 5 5 4867 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 5 5 4886
70 % 340 341 12
50 % 742 744 4
40 % 747 749 8
30 % 1195 1198 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.