Sequence Similarity Clusters for the Entities in PDB 1FDH

Entity #1 | Chains: A,B
HEMOGLOBIN F (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 222 222 22
95 % 250 250 20 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 251 251 21
70 % 331 332 16
50 % 751 754 4
40 % 756 759 8
30 % 1222 1226 8
Entity #2 | Chains: G,H
HEMOGLOBIN F (DEOXY) (GAMMA CHAIN) protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14071
95 % 5 5 5064 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 5 5 5087
70 % 345 346 14
50 % 752 754 4
40 % 757 759 8
30 % 1223 1226 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures