Sequence Similarity Clusters for the Entities in PDB 1FBV

Entity #1 | Chains: A
SIGNAL TRANSDUCTION PROTEIN CBL protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6128
95 % 8 8 3064 Flexibility: Medium
Max RMSD: 22.5, Avg RMSD: 5.9
PDBFlex
90 % 8 8 3113
70 % 9 10 2215
50 % 9 10 2196
40 % 9 10 2189
30 % 9 10 2094
Entity #2 | Chains: B
ZAP-70 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 9438
95 % 5 9 5194 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 5 9 5214
70 % 5 9 5119
50 % 7 12 3693
40 % 146 180 164
30 % 151 188 169

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures