Sequence Similarity Clusters for the Entities in PDB 1FBV

Entity #1 | Chains: A
SIGNAL TRANSDUCTION PROTEIN CBL protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6234
95 % 8 8 3124 Flexibility: Medium
Max RMSD: 22.5, Avg RMSD: 5.9
PDBFlex
90 % 8 8 3169
70 % 9 10 2262
50 % 9 10 2244
40 % 9 10 2237
30 % 9 10 2134
Entity #2 | Chains: B
ZAP-70 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 9598
95 % 5 9 5285 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 5 9 5304
70 % 5 9 5202
50 % 7 12 3751
40 % 147 181 169
30 % 153 191 169

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures