Sequence Similarity Clusters for the Entities in PDB 1FBV

Entity #1 | Chains: A
SIGNAL TRANSDUCTION PROTEIN CBL protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5969
95 % 7 7 3375 Flexibility: Medium
Max RMSD: 22.5, Avg RMSD: 7.2
PDBFlex
90 % 7 7 3424
70 % 8 9 2327
50 % 8 9 2306
40 % 8 9 2289
30 % 8 9 2192
Entity #2 | Chains: B
ZAP-70 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 9207
95 % 5 9 5035 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 5 9 5049
70 % 5 9 4979
50 % 7 12 3610
40 % 144 175 169
30 % 149 183 173

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.