Sequence Similarity Clusters for the Entities in PDB 1FBV

Entity #1 | Chains: A
SIGNAL TRANSDUCTION PROTEIN CBL protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6350
95 % 8 8 3169 Flexibility: Medium
Max RMSD: 22.5, Avg RMSD: 5.9
PDBFlex
90 % 8 8 3215
70 % 9 10 2307
50 % 9 10 2288
40 % 9 10 2275
30 % 9 10 2172
Entity #2 | Chains: B
ZAP-70 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 9805
95 % 5 9 5375 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 5 9 5401
70 % 5 9 5298
50 % 7 12 3815
40 % 147 181 172
30 % 153 191 172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures