Sequence Similarity Clusters for the Entities in PDB 1FBV

Entity #1 | Chains: A
SIGNAL TRANSDUCTION PROTEIN CBL protein, length: 388 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7942
95 % 8 8 3205 Flexibility: Medium
Max RMSD: 22.6, Avg RMSD: 9.1
PDBFlex
90 % 8 8 3261
70 % 9 10 2333
50 % 9 10 2312
40 % 9 10 2293
30 % 9 10 2153
Entity #2 | Chains: B
ZAP-70 PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
UBIQUITIN-CONJUGATING ENZYME E12-18 KDA UBCH7 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6950
95 % 5 9 5307 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 5 9 5341
70 % 5 9 5223
50 % 7 12 3783
40 % 146 179 181
30 % 155 193 185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures