Sequence Similarity Clusters for the Entities in PDB 1FBI

Entity #1 | Chains: L,P
IGG1 F9.13.7 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40854
95 % 32 53 571 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 41 67 376
70 % 1567 2329 1
50 % 3178 4717 1
40 % 3178 4717 1
30 % 3736 5571 1
Entity #2 | Chains: H,Q
IGG1 F9.13.7 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40173
95 % 1 1 30765 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 13 29 871
70 % 1533 2282 2
50 % 3179 4717 1
40 % 3179 4717 1
30 % 3737 5571 1
Entity #3 | Chains: X,Y
GUINEA FOWL LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45349
95 % 2 2 24117 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 682 730 5
70 % 897 950 7
50 % 904 958 8
40 % 936 992 11
30 % 936 992 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.