Sequence Similarity Clusters for the Entities in PDB 1FBI

Entity #1 | Chains: L,P
IGG1 F9.13.7 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41749
95 % 33 54 576 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 42 68 382
70 % 1645 2426 1
50 % 3335 4913 1
40 % 3335 4913 1
30 % 3904 5780 1
Entity #2 | Chains: H,Q
IGG1 F9.13.7 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41052
95 % 1 1 31384 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 13 29 901
70 % 1608 2376 2
50 % 3336 4913 1
40 % 3336 4913 1
30 % 3905 5780 1
Entity #3 | Chains: X,Y
GUINEA FOWL LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46315
95 % 2 2 24617 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 688 736 5
70 % 903 956 7
50 % 910 964 8
40 % 942 998 11
30 % 942 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures