Sequence Similarity Clusters for the Entities in PDB 1FBI

Entity #1 | Chains: L,P
IGG1 F9.13.7 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42254
95 % 33 54 579 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 42 68 398
70 % 1677 2474 1
50 % 3400 5011 1
40 % 3400 5011 1
30 % 4024 5941 1
Entity #2 | Chains: H,Q
IGG1 F9.13.7 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41550
95 % 1 1 31752 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 13 29 908
70 % 1640 2424 2
50 % 3401 5011 1
40 % 3401 5011 1
30 % 4025 5941 1
Entity #3 | Chains: X,Y
GUINEA FOWL LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46863
95 % 2 2 24909 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 689 738 5
70 % 907 961 7
50 % 914 969 8
40 % 946 1003 11
30 % 946 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures