Sequence Similarity Clusters for the Entities in PDB 1FAX

Entity #1 | Chains: A
FACTOR XA protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59327
95 % 130 134 262 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 130 134 276
70 % 131 135 313
50 % 681 699 14
40 % 1637 1721 4
30 % 1773 1871 6
Entity #2 | Chains: L
FACTOR XA protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71440
95 % 24 26 1721 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 1.2
PDBFlex
90 % 24 26 1762
70 % 24 26 1780
50 % 24 26 1825
40 % 27 31 1512
30 % 27 31 1483

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures