Sequence Similarity Clusters for the Entities in PDB 1FAV

Entity #1 | Chains: A
HIV-1 ENVELOPE PROTEIN CHIMERA protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67109
95 % 1 1 54301
90 % 1 1 51454
70 % 1 1 44961
50 % 1 1 38125
40 % 1 1 33343
30 % 1 1 27870
Entity #2 | Chains: C
PROTEIN (TRANSMEMBRANE GLYCOPROTEIN) protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67108
95 % 1 1 54300
90 % 1 1 51453
70 % 1 1 44960
50 % 1 1 38124
40 % 1 1 33342
30 % 1 1 27869

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures