Sequence Similarity Clusters for the Entities in PDB 1FAV

Entity #1 | Chains: A
HIV-1 ENVELOPE PROTEIN CHIMERA protein, length: 79 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73649
95 % 1 1 50926
90 % 1 1 48255
70 % 1 1 42262
50 % 1 2 16561
40 % 1 2 14756
30 % 1 2 12620
Entity #2 | Chains: C
PROTEIN (TRANSMEMBRANE GLYCOPROTEIN) protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 76515
95 % 1 1 53252
90 % 1 1 50463
70 % 1 1 44143
50 % 1 1 37624
40 % 1 1 33152
30 % 1 1 28091

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures