Sequence Similarity Clusters for the Entities in PDB 1FAK

Entity #1 | Chains: L
PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 32 1286
95 % 15 32 1740
90 % 15 32 1775
70 % 15 32 1799
50 % 51 74 747
40 % 51 74 782
30 % 51 74 774
Entity #2 | Chains: H
PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 97 270
95 % 74 101 361 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 74 101 385
70 % 74 101 422
50 % 74 101 502
40 % 1348 1685 4
30 % 1454 1834 6
Entity #3 | Chains: T
PROTEIN (SOLUBLE TISSUE FACTOR) protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 39 932
95 % 18 40 1228 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 18 40 1258
70 % 18 41 1231
50 % 18 41 1285
40 % 18 41 1300
30 % 18 41 1276
Entity #4 | Chains: I
PROTEIN (5L15) protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72538
95 % 1 1 50423
90 % 1 1 47875
70 % 94 115 173
50 % 108 148 174
40 % 112 162 173
30 % 112 162 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.