Sequence Similarity Clusters for the Entities in PDB 1FAK

Entity #1 | Chains: L
PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 32 1238
95 % 15 32 1675 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 15 32 1707
70 % 15 32 1742
50 % 51 74 713
40 % 51 74 748
30 % 51 74 737
Entity #2 | Chains: H
PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 97 260
95 % 74 101 352 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 74 101 375
70 % 74 101 413
50 % 74 101 490
40 % 1339 1674 4
30 % 1445 1822 6
Entity #3 | Chains: T
PROTEIN (SOLUBLE TISSUE FACTOR) protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 39 911
95 % 18 40 1201 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 18 40 1231
70 % 18 41 1203
50 % 18 41 1249
40 % 18 41 1268
30 % 18 41 1244
Entity #4 | Chains: I
PROTEIN (5L15) protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70683
95 % 1 1 49058
90 % 1 1 46615
70 % 94 115 173
50 % 108 148 171
40 % 112 162 171
30 % 112 162 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.