Sequence Similarity Clusters for the Entities in PDB 1FAK

Entity #1 | Chains: L
PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 32 1271
95 % 15 32 1721 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 15 32 1754
70 % 15 32 1778
50 % 51 74 739
40 % 51 74 770
30 % 51 74 764
Entity #2 | Chains: H
PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 97 264
95 % 74 101 356 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 74 101 379
70 % 74 101 416
50 % 74 101 499
40 % 1344 1682 4
30 % 1450 1831 6
Entity #3 | Chains: T
PROTEIN (SOLUBLE TISSUE FACTOR) protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 39 924
95 % 18 40 1215 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 18 40 1245
70 % 18 41 1216
50 % 18 26 1273
40 % 18 41 1287
30 % 18 41 1263
Entity #4 | Chains: I
PROTEIN (5L15) protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71483
95 % 1 1 49629
90 % 1 1 47136
70 % 94 115 172
50 % 108 148 172
40 % 112 162 172
30 % 112 162 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.