Sequence Similarity Clusters for the Entities in PDB 1FAK

Entity #1 | Chains: L
PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 32 1315
95 % 15 32 1762 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 15 32 1799
70 % 15 32 1825
50 % 51 74 760
40 % 51 74 796
30 % 51 74 788
Entity #2 | Chains: H
PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 97 293
95 % 74 101 376 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 74 101 404
70 % 74 101 438
50 % 74 101 509
40 % 1356 1698 4
30 % 1462 1848 6
Entity #3 | Chains: T
PROTEIN (SOLUBLE TISSUE FACTOR) protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 39 958
95 % 18 40 1249 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 18 40 1279
70 % 18 41 1248
50 % 18 41 1305
40 % 18 41 1317
30 % 18 41 1289
Entity #4 | Chains: I
PROTEIN (5L15) protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73424
95 % 1 1 51018
90 % 1 1 48395
70 % 94 115 176
50 % 108 148 178
40 % 112 162 176
30 % 112 162 188

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures