Sequence Similarity Clusters for the Entities in PDB 1FAK

Entity #1 | Chains: L
PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 32 1519
95 % 15 32 1794 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 15 32 1836
70 % 15 32 1848
50 % 51 74 791
40 % 51 74 822
30 % 53 79 769
Entity #2 | Chains: H
PROTEIN (BLOOD COAGULATION FACTOR VIIA) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 97 349
95 % 74 101 419 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 74 101 455
70 % 74 101 487
50 % 74 101 538
40 % 1479 1873 4
30 % 1488 1887 7
Entity #3 | Chains: T
PROTEIN (SOLUBLE TISSUE FACTOR) protein, length: 206 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 39 1124
95 % 18 40 1307 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.0
PDBFlex
90 % 18 40 1332
70 % 18 41 1296
50 % 18 41 1355
40 % 18 41 1348
30 % 18 41 1340
Entity #4 | Chains: I
PROTEIN (5L15) protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50418
95 % 1 1 41692
90 % 1 1 39715
70 % 94 115 181
50 % 108 149 188
40 % 113 164 188
30 % 113 164 209

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures