Sequence Similarity Clusters for the Entities in PDB 1FAI

Entity #1 | Chains: L
IGG2B-KAPPA R19.9 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40547
95 % 22 53 563 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 30 67 370
70 % 1250 2287 1
50 % 2553 4633 1
40 % 2553 4633 1
30 % 2928 5461 1
Entity #2 | Chains: H
IGG2B-KAPPA R19.9 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39871
95 % 1 2 30548 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 29389
70 % 1240 2244 2
50 % 2554 4633 1
40 % 2554 4633 1
30 % 2929 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.