Sequence Similarity Clusters for the Entities in PDB 1FAI

Entity #1 | Chains: L
IGG2B-KAPPA R19.9 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39908
95 % 22 53 550 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 30 67 366
70 % 1239 2264 1
50 % 2531 4587 1
40 % 2531 4587 1
30 % 2896 5392 1
Entity #2 | Chains: H
IGG2B-KAPPA R19.9 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39238
95 % 1 2 30044 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 28918
70 % 1229 2222 2
50 % 2532 4587 1
40 % 2532 4587 1
30 % 2897 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.