Sequence Similarity Clusters for the Entities in PDB 1FAI

Entity #1 | Chains: L
IGG2B-KAPPA R19.9 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 42253
95 % 23 54 579 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 31 68 398
70 % 1367 2474 1
50 % 2791 5011 1
40 % 2791 5011 1
30 % 3233 5941 1
Entity #2 | Chains: H
IGG2B-KAPPA R19.9 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41549
95 % 1 2 31751 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 30522
70 % 1353 2424 2
50 % 2792 5011 1
40 % 2792 5011 1
30 % 3234 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures