Sequence Similarity Clusters for the Entities in PDB 1FAI

Entity #1 | Chains: L
IGG2B-KAPPA R19.9 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39546
95 % 23 54 584 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 31 68 401
70 % 1399 2553 1
50 % 2864 5180 1
40 % 3267 5834 1
30 % 4008 7269 1
Entity #2 | Chains: H
IGG2B-KAPPA R19.9 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 34403
95 % 1 2 29521 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 28332
70 % 1388 2511 2
50 % 2865 5180 1
40 % 3268 5834 1
30 % 4009 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures