Sequence Similarity Clusters for the Entities in PDB 1FAI

Entity #1 | Chains: L
IGG2B-KAPPA R19.9 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41437
95 % 23 54 569 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.9
PDBFlex
90 % 31 68 377
70 % 1317 2392 1
50 % 2689 4843 1
40 % 2689 4843 1
30 % 3080 5705 1
Entity #2 | Chains: H
IGG2B-KAPPA R19.9 FAB (HEAVY CHAIN) protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40743
95 % 1 2 31184 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 29995
70 % 1303 2342 2
50 % 2690 4843 1
40 % 2690 4843 1
30 % 3081 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures