Sequence Similarity Clusters for the Entities in PDB 1F9F

Entity #1 | Chains: A,B,C,D
Regulatory protein E2 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13643
95 % 1 2 13008 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 1 2 12801
70 % 1 2 12071
50 % 2 12 2185
40 % 2 12 2154
30 % 2 12 2039

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1F9F 1 A, B, C, D Regulatory protein E2 RESIDUES 287-365 OF HPV-18 E2 WITH GSHM 337042
2 1JJ4 2 A, B Regulatory protein E2 DNA-binding domain 337042