Sequence Similarity Clusters for the Entities in PDB 1F9F

Entity #1 | Chains: A,B,C,D
Regulatory protein E2 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13348
95 % 1 2 12729 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 1 2 12524
70 % 1 2 11818
50 % 2 12 2137
40 % 2 12 2106
30 % 2 12 2002

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1R8H 1 A, B, C, D, E, F Regulatory protein E2 DNA-binding domain 333754
2 1F9F 1 A, B, C, D Regulatory protein E2 RESIDUES 287-365 OF HPV-18 E2 WITH GSHM 337042
3 3MI7 1 X Regulatory protein E2 UNP residues 283-365 337041
4 1BY9 1 A REGULATORY PROTEIN E2 DNA-BINDING DOMAIN 337041
5 1JJ4 2 A, B Regulatory protein E2 DNA-binding domain 337042
6 1A7G 1 E REGULATORY PROTEIN E2 DNA-BINDING DOMAIN 337041
7 2AYE 1 A, B, C, D, E, F Regulatory protein E2 C terminal domain 333754
8 2AYG 2 A, B Regulatory protein E2 C terminal domain 333754
9 2AYB 2 A, B Regulatory protein E2 C Terminal Domain 333754
10 1ZZF 1 A, B Regulatory protein E2 DNA-binding domain 337041
11 1R8P 1 A, B Regulatory protein E2 DNA binding domain 337041
12 1DHM 1 A, B E2 PROTEIN FROM HUMAN PAPILLOMAVIRUS-31 DNA-BINDING DOMAIN 337041