Sequence Similarity Clusters for the Entities in PDB 1F9E

Entity #1 | Chains: A,C,E,G,I,K
CASPASE-8 ALPHA CHAIN protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 5413
95 % 7 7 3650 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 7 7 3699
70 % 7 7 3643
50 % 7 7 3542
40 % 47 48 779
30 % 47 48 767
Entity #2 | Chains: B,D,F,H,J,L
CASPASE-8 BETA CHAIN protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 2991
95 % 7 7 3688 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 7 3739
70 % 7 7 3682
50 % 7 7 3571
40 % 7 7 3441
30 % 80 83 341
Entity #3 | Chains: Q,R,S,T,U,V
(PHQ)DEVD protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures