Sequence Similarity Clusters for the Entities in PDB 1F9E

Entity #1 | Chains: A,C,E,G,I,K
CASPASE-8 ALPHA CHAIN protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 5139
95 % 7 7 3491 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 7 7 3541
70 % 7 7 3485
50 % 7 7 3404
40 % 47 48 725
30 % 47 48 718
Entity #2 | Chains: B,D,F,H,J,L
CASPASE-8 BETA CHAIN protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 2834
95 % 7 7 3529 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 7 7 3581
70 % 7 7 3524
50 % 7 7 3434
40 % 7 7 3319
30 % 80 83 320
Entity #3 | Chains: Q,R,S,T,U,V
(PHQ)DEVD protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.