Sequence Similarity Clusters for the Entities in PDB 1F9E

Entity #1 | Chains: A,C,E,G,I,K
CASPASE-8 ALPHA CHAIN protein, length: 153 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 6105
95 % 7 7 3754 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 7 7 3825
70 % 7 7 3753
50 % 7 7 3658
40 % 47 48 795
30 % 47 48 794
Entity #2 | Chains: B,D,F,H,J,L
CASPASE-8 BETA CHAIN protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 3290
95 % 7 7 3592 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 7 3588
70 % 7 7 3534
50 % 7 7 3454
40 % 7 7 3315
30 % 94 97 317
Entity #3 | Chains: Q,R,S,T,U,V
(PHQ)DEVD protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures