Sequence Similarity Clusters for the Entities in PDB 1F99

Entity #1 | Chains: A,K,M
R-PHYCOCYANIN protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29140
95 % 1 1 24170 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 23356
70 % 19 36 293
50 % 19 42 293
40 % 29 54 63
30 % 72 143 18
Entity #2 | Chains: B,L,N
R-PHYCOCYANIN protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28993
95 % 1 1 24069 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 23255
70 % 19 39 292
50 % 35 62 39
40 % 43 87 29
30 % 73 143 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures