Sequence Similarity Clusters for the Entities in PDB 1F99

Entity #1 | Chains: A,K,M
R-PHYCOCYANIN protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28527
95 % 1 1 23695 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 22919
70 % 19 36 279
50 % 19 42 281
40 % 29 54 173
30 % 72 143 45
Entity #2 | Chains: B,L,N
R-PHYCOCYANIN protein, length: 172 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28380
95 % 1 1 23589 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 1 22815
70 % 19 39 278
50 % 35 62 145
40 % 43 87 121
30 % 73 143 45

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.