Sequence Similarity Clusters for the Entities in PDB 1F93

Entity #1 | Chains: A,B,C,D
DIMERIZATION COFACTOR OF HEPATOCYTE NUCLEAR FACTOR 1-ALPHA protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 1587
95 % 3 5 1523 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 3 5 1553
70 % 3 5 1549
50 % 7 9 1311
40 % 10 12 1168
30 % 10 12 1148
Entity #2 | Chains: E,F,G,H
HEPATOCYTE NUCLEAR FACTOR 1-ALPHA protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9878
95 % 5 5 4240 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 6 3669
70 % 6 6 3629
50 % 6 6 3532
40 % 6 6 3409
30 % 6 6 3184

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.