Sequence Similarity Clusters for the Entities in PDB 1F93

Entity #1 | Chains: A,B,C,D
DIMERIZATION COFACTOR OF HEPATOCYTE NUCLEAR FACTOR 1-ALPHA protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 1652
95 % 3 5 1570 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 3 5 1607
70 % 3 5 1604
50 % 7 9 1357
40 % 10 12 1201
30 % 10 12 1181
Entity #2 | Chains: E,F,G,H
HEPATOCYTE NUCLEAR FACTOR 1-ALPHA protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10204
95 % 5 5 4387 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 6 6 3805
70 % 6 6 3752
50 % 6 6 3639
40 % 6 6 3503
30 % 6 6 3272

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures