Sequence Similarity Clusters for the Entities in PDB 1F93

Entity #1 | Chains: A,B,C,D
DIMERIZATION COFACTOR OF HEPATOCYTE NUCLEAR FACTOR 1-ALPHA protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 1671
95 % 3 5 1590 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 3 5 1621
70 % 3 5 1625
50 % 7 9 1372
40 % 10 12 1216
30 % 10 12 1199
Entity #2 | Chains: E,F,G,H
HEPATOCYTE NUCLEAR FACTOR 1-ALPHA protein, length: 32 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10380
95 % 5 5 4443 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 6 6 3854
70 % 6 6 3800
50 % 6 6 3684
40 % 6 6 3545
30 % 6 6 3312

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures