Sequence Similarity Clusters for the Entities in PDB 1F8V

Entity #1 | Chains: R
RNA rna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C
MATURE CAPSID PROTEIN BETA protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 25367
95 % 1 1 21400
90 % 1 1 20804
70 % 1 1 19161
50 % 1 1 16656
40 % 1 1 14884
30 % 3 6 3003
Entity #3 | Chains: D,E,F
MATURE CAPSID PROTEIN GAMMA protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29377
95 % 1 1 24351 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.4
PDBFlex
90 % 1 1 23563
70 % 1 1 21538
50 % 1 1 18694
40 % 1 1 16650
30 % 1 1 14288

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.