Sequence Similarity Clusters for the Entities in PDB 1F8V

Entity #1 | Chains: R
RNA rna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C
MATURE CAPSID PROTEIN BETA protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25821
95 % 1 1 21812 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 21197
70 % 1 1 19468
50 % 1 1 16907
40 % 1 1 15103
30 % 3 6 3053
Entity #3 | Chains: D,E,F
MATURE CAPSID PROTEIN GAMMA protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29919
95 % 1 1 24826 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 2.0
PDBFlex
90 % 1 1 24011
70 % 1 1 21855
50 % 1 1 18937
40 % 1 1 16862
30 % 1 1 14468

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.