Sequence Similarity Clusters for the Entities in PDB 1F8V

Entity #1 | Chains: R
RNA rna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C
MATURE CAPSID PROTEIN BETA protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26981
95 % 1 1 22726 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 22059
70 % 1 1 20236
50 % 1 1 17538
40 % 1 1 15647
30 % 3 6 3181
Entity #3 | Chains: D,E,F
MATURE CAPSID PROTEIN GAMMA protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31164
95 % 1 1 25803 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.4
PDBFlex
90 % 1 1 24930
70 % 1 1 22635
50 % 1 1 19578
40 % 1 1 17414
30 % 1 1 14939

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures