Sequence Similarity Clusters for the Entities in PDB 1F8V

Entity #1 | Chains: R
RNA rna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C
MATURE CAPSID PROTEIN BETA protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29257
95 % 1 1 25534 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 24660
70 % 1 1 22369
50 % 1 1 19253
40 % 3 6 3376
30 % 3 6 3171
Entity #3 | Chains: D,E,F
MATURE CAPSID PROTEIN GAMMA protein, length: 40 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29258
95 % 1 1 25535 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.4
PDBFlex
90 % 1 1 24661
70 % 1 1 22370
50 % 1 1 19254
40 % 1 1 17008
30 % 1 1 14274

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures