Sequence Similarity Clusters for the Entities in PDB 1F8T

Entity #1 | Chains: L
ANTIBODY FAB FRAGMENT (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28612
95 % 27 52 680 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 27 53 686
70 % 674 2474 1
50 % 1382 5011 1
40 % 1382 5011 1
30 % 1573 5941 1
Entity #2 | Chains: H
ANTIBODY FAB FRAGMENT (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41636
95 % 1 3 23811 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 3 18 2676
70 % 666 2424 2
50 % 1383 5011 1
40 % 1383 5011 1
30 % 1574 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures