Sequence Similarity Clusters for the Entities in PDB 1F8T

Entity #1 | Chains: L
ANTIBODY FAB FRAGMENT (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28029
95 % 27 52 675 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.8
PDBFlex
90 % 27 53 680
70 % 640 2392 1
50 % 1313 4843 1
40 % 1313 4843 1
30 % 1465 5705 1
Entity #2 | Chains: H
ANTIBODY FAB FRAGMENT (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40830
95 % 1 3 23352 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 3 18 2617
70 % 632 2342 2
50 % 1314 4843 1
40 % 1314 4843 1
30 % 1466 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures