Sequence Similarity Clusters for the Entities in PDB 1F8T

Entity #1 | Chains: L
ANTIBODY FAB FRAGMENT (LIGHT CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29034
95 % 26 50 718 Flexibility: Low
Max RMSD: 6.4, Avg RMSD: 1.9
PDBFlex
90 % 27 53 688
70 % 685 2538 1
50 % 1409 5152 1
40 % 1650 5806 1
30 % 2019 7240 1
Entity #2 | Chains: H
ANTIBODY FAB FRAGMENT (HEAVY CHAIN) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29876
95 % 1 3 26066 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.0
PDBFlex
90 % 3 19 2547
70 % 678 2497 2
50 % 1410 5152 1
40 % 1651 5806 1
30 % 2020 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures