1F6U

NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop sl2 of the psi-RNA packaging signal. Implications for genome recognition


Sequence Similarity Clusters for the Entities in PDB 1F6U

Entity #1 | Chains: B
HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING rna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
HIV-1 NUCLEOCAPSID PROTEIN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 31112
95 % 2 4 21681
90 % 3 6 13773
70 % 3 6 12925
50 % 3 6 11520
40 % 3 6 10437
30 % 3 6 9097

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures