Sequence Similarity Clusters for the Entities in PDB 1F6U

Entity #1 | Chains: B
HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING rna, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
HIV-1 NUCLEOCAPSID PROTEIN protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 30047
95 % 2 4 20936
90 % 3 6 13290
70 % 3 6 12494
50 % 3 6 11144
40 % 3 6 10112
30 % 3 6 8818

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.