Sequence Similarity Clusters for the Entities in PDB 1F6O

Entity #1 | Chains: D
DNA (5'-D(*GP*AP*CP*AP*TP*GP*(YRR)P*TP*TP*GP*CP*CP*T)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
3-METHYL-ADENINE DNA GLYCOSYLASE protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40043
95 % 4 6 9214 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 4 6 9124
70 % 4 6 8751
50 % 4 6 7916
40 % 4 6 7271
30 % 4 6 6414

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3UBY 1 A, B DNA-3-methyladenine glycosylase DELTA79AAG 9606 3.2.2.21 | Details
2 1EWN 3 A 3-METHYL-ADENINE DNA GLYCOSYLASE E125Q 9606 3.2.2.21 | Details
3 3QI5 1 A, B DNA-3-methyladenine glycosylase delta79AAG 9606 3.2.2.21 | Details
4 1F6O 3 A 3-METHYL-ADENINE DNA GLYCOSYLASE C-TERMINAL FRAGMENT 9606 3.2.2.21 | Details
5 1F4R 3 A 3-METHYL-ADENINE DNA GLYCOSYLASE 9606 3.2.2.21 | Details
6 1BNK 3 A PROTEIN (3-METHYLADENINE DNA GLYCOSYLASE) 9606 3.2.2.21 | Details