Sequence Similarity Clusters for the Entities in PDB 1F6O

Entity #1 | Chains: D
DNA (5'-D(*GP*AP*CP*AP*TP*GP*(YRR)P*TP*TP*GP*CP*CP*T)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
3-METHYL-ADENINE DNA GLYCOSYLASE protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40540
95 % 4 6 9332 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 4 6 9232
70 % 4 6 8839
50 % 4 6 8004
40 % 4 6 7355
30 % 4 6 6483

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3UBY 1 A, B DNA-3-methyladenine glycosylase DELTA79AAG 9606 3.2.2.21 | Details
2 1EWN 3 A 3-METHYL-ADENINE DNA GLYCOSYLASE E125Q 9606 3.2.2.21 | Details
3 3QI5 1 A, B DNA-3-methyladenine glycosylase delta79AAG 9606 3.2.2.21 | Details
4 1F6O 3 A 3-METHYL-ADENINE DNA GLYCOSYLASE C-TERMINAL FRAGMENT 9606 3.2.2.21 | Details
5 1F4R 3 A 3-METHYL-ADENINE DNA GLYCOSYLASE 9606 3.2.2.21 | Details
6 1BNK 3 A PROTEIN (3-METHYLADENINE DNA GLYCOSYLASE) 9606 3.2.2.21 | Details