Sequence Similarity Clusters for the Entities in PDB 1F6O

Entity #1 | Chains: D
DNA (5'-D(*GP*AP*CP*AP*TP*GP*(YRR)P*TP*TP*GP*CP*CP*T)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3') dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
3-METHYL-ADENINE DNA GLYCOSYLASE protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41168
95 % 4 6 9452 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.2
PDBFlex
90 % 4 6 9353
70 % 4 6 8953
50 % 4 6 8110
40 % 4 6 7454
30 % 4 6 6569

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1F6O 3 A 3-METHYL-ADENINE DNA GLYCOSYLASE C-TERMINAL FRAGMENT 9606 3.2.2.21 | Details
2 1F4R 3 A 3-METHYL-ADENINE DNA GLYCOSYLASE 9606 3.2.2.21 | Details