Sequence Similarity Clusters for the Entities in PDB 1F66

Entity #1 | Chains: I,J
PALINDROMIC 146 BASE PAIR DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39325
95 % 29 126 106
90 % 29 129 107
70 % 29 130 122
50 % 29 133 145
40 % 29 133 161
30 % 29 133 179
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 117 89
95 % 31 135 99
90 % 31 140 84
70 % 31 140 98
50 % 31 140 134
40 % 31 140 146
30 % 31 140 167
Entity #4 | Chains: C,G
HISTONE H2A.Z protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 20133
95 % 1 3 11347
90 % 1 3 11162
70 % 1 3 10507
50 % 27 135 133
40 % 27 135 145
30 % 27 135 165
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 49 227
95 % 23 114 118
90 % 23 117 119
70 % 24 123 129
50 % 24 123 155
40 % 24 123 171
30 % 24 123 186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.