Sequence Similarity Clusters for the Entities in PDB 1F66

Entity #1 | Chains: I,J
PALINDROMIC 146 BASE PAIR DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40468
95 % 31 137 100
90 % 31 140 88
70 % 31 141 100
50 % 31 144 132
40 % 31 144 151
30 % 31 144 168
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 128 83
95 % 34 147 72
90 % 34 152 74
70 % 34 152 88
50 % 34 152 126
40 % 34 152 143
30 % 34 152 155
Entity #4 | Chains: C,G
HISTONE H2A.Z protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 8520
95 % 3 6 6456
90 % 3 6 6435
70 % 3 6 6279
50 % 31 148 124
40 % 31 148 142
30 % 31 148 154
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 52 217
95 % 25 124 112
90 % 25 127 115
70 % 26 133 120
50 % 26 133 148
40 % 26 133 165
30 % 26 133 182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.