Sequence Similarity Clusters for the Entities in PDB 1F66

Entity #1 | Chains: I,J
PALINDROMIC 146 BASE PAIR DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43692
95 % 35 150 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.3
PDBFlex
90 % 35 153 77
70 % 35 154 96
50 % 35 157 131
40 % 35 157 146
30 % 35 157 161
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 141 76
95 % 38 160 74 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 38 165 75
70 % 38 165 87
50 % 38 165 123
40 % 38 165 140
30 % 38 165 155
Entity #4 | Chains: C,G
HISTONE H2A.Z protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 9325
95 % 3 6 7057 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 6 7020
70 % 3 6 6814
50 % 35 164 120
40 % 35 164 139
30 % 35 164 152
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 55 228
95 % 29 135 111 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 29 140 107
70 % 30 147 104
50 % 30 147 140
40 % 30 147 156
30 % 30 147 174

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.