Sequence Similarity Clusters for the Entities in PDB 1F66

Entity #1 | Chains: I,J
PALINDROMIC 146 BASE PAIR DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42646
95 % 35 147 80
90 % 35 150 78
70 % 35 151 97
50 % 35 154 134
40 % 35 154 149
30 % 35 154 165
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 138 77
95 % 38 157 73
90 % 38 162 73
70 % 38 162 87
50 % 38 162 123
40 % 38 162 140
30 % 38 162 155
Entity #4 | Chains: C,G
HISTONE H2A.Z protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 9054
95 % 3 6 6843
90 % 3 6 6813
70 % 3 6 6617
50 % 35 160 120
40 % 35 160 138
30 % 35 160 153
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 54 227
95 % 29 132 113
90 % 29 137 111
70 % 30 144 106
50 % 30 144 143
40 % 30 144 159
30 % 30 144 178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.