Sequence Similarity Clusters for the Entities in PDB 1F66

Entity #1 | Chains: I,J
PALINDROMIC 146 BASE PAIR DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44305
95 % 35 151 76
90 % 35 154 78
70 % 35 155 93
50 % 35 158 128
40 % 35 158 145
30 % 35 158 160
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 142 62
95 % 38 161 74
90 % 38 166 73
70 % 38 166 86
50 % 38 166 122
40 % 38 166 140
30 % 38 166 154
Entity #4 | Chains: C,G
HISTONE H2A.Z protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 9449
95 % 3 6 7183
90 % 3 6 7143
70 % 3 6 6955
50 % 35 165 116
40 % 35 165 138
30 % 35 165 150
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 56 217
95 % 29 136 108
90 % 29 141 91
70 % 30 148 100
50 % 30 148 139
40 % 30 148 156
30 % 30 148 172

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.