Sequence Similarity Clusters for the Entities in PDB 1F66

Entity #1 | Chains: I,J
PALINDROMIC 146 BASE PAIR DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44876
95 % 36 158 75 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 36 161 76
70 % 36 162 89
50 % 36 165 125
40 % 36 165 143
30 % 36 165 157
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 149 56
95 % 39 168 71 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 39 173 72
70 % 39 173 84
50 % 39 173 117
40 % 39 173 139
30 % 39 173 147
Entity #4 | Chains: C,G
HISTONE H2A.Z protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 9587
95 % 3 6 7284 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 6 7237
70 % 3 6 7052
50 % 36 172 110
40 % 36 172 134
30 % 36 172 143
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 61 203
95 % 30 144 84 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 30 149 84
70 % 31 156 97
50 % 31 156 134
40 % 31 156 149
30 % 31 156 162

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.