Sequence Similarity Clusters for the Entities in PDB 1F66

Entity #1 | Chains: I,J
PALINDROMIC 146 BASE PAIR DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40138
95 % 31 134 101
90 % 31 137 102
70 % 31 138 104
50 % 31 141 136
40 % 31 141 152
30 % 31 141 173
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 125 83
95 % 34 144 75
90 % 34 149 74
70 % 34 149 88
50 % 34 149 126
40 % 34 149 145
30 % 34 149 157
Entity #4 | Chains: C,G
HISTONE H2A.Z protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 8455
95 % 3 6 6410
90 % 3 6 6388
70 % 3 6 6236
50 % 31 146 124
40 % 31 146 142
30 % 31 146 154
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 50 223
95 % 25 122 113
90 % 25 125 116
70 % 26 131 123
50 % 26 131 151
40 % 26 131 170
30 % 26 131 184

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.