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2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z
Sequence Clustering and Redundancy Reduction Results
1F66
Sequence Clusters for the Sequence Entities in PDB 1F66
Entity #1: Chains: I,J - PALINDROMIC 146 BASE PAIR DNA FRAGMENT dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A,E - HISTONE H3 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 36036
95% 20 98 124
90% 20 101 131
70% 20 101 148
50% 20 104 174
40% 20 104 192
30% 20 104 208
Entity #3: Chains: B,F - HISTONE H4 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 87 101
95% 22 103 122
90% 22 107 124
70% 22 107 139
50% 22 107 164
40% 22 107 181
30% 22 107 197
Entity #4: Chains: C,G - HISTONE H2A.Z protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18364
95% 1 3 10368
90% 1 3 10214
70% 1 3 9665
50% 17 101 165
40% 17 101 182
30% 17 101 199
Entity #5: Chains: D,H - HISTONE H2B protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 42 245
95% 14 86 136
90% 14 88 145
70% 15 94 153
50% 15 94 186
40% 15 94 202
30% 15 94 217
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.