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2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z
Sequence Clustering and Redundancy Reduction Results
1F66
Sequence Clusters for the Sequence Entities in PDB 1F66
Entity #1: Chains: I,J - PALINDROMIC 146 BASE PAIR DNA FRAGMENT dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: A,E - HISTONE H3 protein, length: 136 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 35766
95% 20 98 121
90% 20 101 127
70% 20 101 144
50% 20 104 168
40% 20 104 187
30% 20 104 204
Entity #3: Chains: B,F - HISTONE H4 protein, length: 103 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 84 100
95% 21 100 119
90% 21 104 102
70% 21 104 122
50% 21 104 161
40% 21 104 180
30% 21 104 198
Entity #4: Chains: C,G - HISTONE H2A.Z protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 18223
95% 1 3 10296
90% 1 3 10140
70% 1 3 9603
50% 17 101 156
40% 17 101 177
30% 17 101 194
Entity #5: Chains: D,H - HISTONE H2B protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 42 245
95% 14 86 134
90% 14 88 142
70% 15 94 149
50% 15 94 183
40% 15 94 200
30% 15 94 217
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.