Sequence Similarity Clusters for the Entities in PDB 1F66

Entity #1 | Chains: I,J
PALINDROMIC 146 BASE PAIR DNA FRAGMENT dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42350
95 % 34 143 90
90 % 34 146 83
70 % 34 147 101
50 % 34 150 136
40 % 34 150 152
30 % 34 150 169
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 103 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 134 78
95 % 37 153 72
90 % 37 158 73
70 % 37 158 88
50 % 37 158 127
40 % 37 158 142
30 % 37 158 158
Entity #4 | Chains: C,G
HISTONE H2A.Z protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 8988
95 % 3 6 6779
90 % 3 6 6752
70 % 3 6 6566
50 % 34 156 121
40 % 34 156 139
30 % 34 156 155
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 52 230
95 % 28 128 114
90 % 28 133 113
70 % 29 140 119
50 % 29 140 147
40 % 29 140 162
30 % 29 140 182

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.