Sequence Similarity Clusters for the Entities in PDB 1F5T

Entity #1 | Chains: E
43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE dna, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE dna, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C,D
DIPHTHERIA TOXIN REPRESSOR protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23561
95 % 1 1 20168 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 1 19621
70 % 1 1 18061
50 % 1 1 15674
40 % 1 1 13960
30 % 1 1 11947

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.