Sequence Similarity Clusters for the Entities in PDB 1F5T

Entity #1 | Chains: E
43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE dna, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
43MER DNA CONTAINING DXTR CONSENSUS BINDING SEQUENCE dna, length: 43 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C,D
DIPHTHERIA TOXIN REPRESSOR protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24044
95 % 1 1 20539 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 1 19966
70 % 1 1 18367
50 % 1 1 15931
40 % 1 1 14179
30 % 1 1 12132

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures