Sequence Similarity Clusters for the Entities in PDB 1F5Q

Entity #1 | Chains: A,C
CYCLIN DEPENDENT KINASE 2 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 332 367 41
95 % 349 386 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 349 386 39
70 % 349 386 51
50 % 374 436 71
40 % 388 470 60
30 % 3576 4494 2
Entity #2 | Chains: B,D
GAMMA HERPESVIRUS CYCLIN protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35432
95 % 1 1 30398 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29144
70 % 1 1 26142
50 % 1 1 22405
40 % 1 1 19752
30 % 1 1 16544

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures