Sequence Similarity Clusters for the Entities in PDB 1F5Q

Entity #1 | Chains: A,C
CYCLIN DEPENDENT KINASE 2 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 334 369 42
95 % 356 393 36 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 356 393 42
70 % 356 393 52
50 % 385 448 72
40 % 399 483 67
30 % 3660 4588 2
Entity #2 | Chains: B,D
GAMMA HERPESVIRUS CYCLIN protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36098
95 % 1 1 30940 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29654
70 % 1 1 26565
50 % 1 1 22777
40 % 1 1 20077
30 % 1 1 16817

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures