Sequence Similarity Clusters for the Entities in PDB 1F5Q

Entity #1 | Chains: A,C
CYCLIN DEPENDENT KINASE 2 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 329 365 23
95 % 343 380 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 343 380 37
70 % 343 380 44
50 % 362 405 66
40 % 382 462 49
30 % 3132 3941 2
Entity #2 | Chains: B,D
GAMMA HERPESVIRUS CYCLIN protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39017
95 % 1 1 30168 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29111
70 % 1 1 26228
50 % 1 1 22436
40 % 1 1 19756
30 % 1 1 16764

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures