Sequence Similarity Clusters for the Entities in PDB 1F5Q

Entity #1 | Chains: A,C
CYCLIN DEPENDENT KINASE 2 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 331 367 23
95 % 346 383 34 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 346 383 38
70 % 346 383 44
50 % 365 408 73
40 % 385 465 50
30 % 3253 4076 2
Entity #2 | Chains: B,D
GAMMA HERPESVIRUS CYCLIN protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39839
95 % 1 1 30760 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29665
70 % 1 1 26708
50 % 1 1 22813
40 % 1 1 20086
30 % 1 1 17033

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures