Sequence Similarity Clusters for the Entities in PDB 1F5E

Entity #1 | Chains: A
DNA (5'-D(P*CP*GP*TP*GP*CP*GP*GP*AP*TP*C)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA (5'-D(P*GP*AP*TP*CP*CP*GP*CP*AP*CP*G)-3') dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: P
ETHANOL REGULON TRANSCRIPTIONAL FACTOR protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 21439
95 % 1 4 19308
90 % 1 4 18773
70 % 1 4 17297
50 % 1 4 15073
40 % 1 4 13397
30 % 1 4 11281

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1F5E 3 P ETHANOL REGULON TRANSCRIPTIONAL FACTOR N-TERMINAL DNA-BINDING DOMAIN, RESIDUES 1-60 162425
2 1F4S 3 P ETHANOL REGULON TRANSCRIPTIONAL FACTOR 162425
3 3ALC 1 A PROTEIN (ETHANOL REGULON TRANSCRIPTIONAL ACTIVATOR) DNA-BINDING DOMAIN 162425
4 2ALC 1 A PROTEIN (ETHANOL REGULON TRANSCRIPTIONAL ACTIVATOR) DNA-BINDING DOMAIN 162425