Sequence Similarity Clusters for the Entities in PDB 1F58

Entity #1 | Chains: L
PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30944
95 % 1 3 25321 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.8
PDBFlex
90 % 12 111 158
70 % 500 2240 2
50 % 636 2825 2
40 % 636 2825 2
30 % 1309 5727 1
Entity #2 | Chains: H
PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30423
95 % 1 3 25643 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.7
PDBFlex
90 % 1 3 24816
70 % 625 2736 1
50 % 663 2860 1
40 % 663 2860 1
30 % 1310 5727 1
Entity #3 | Chains: P
Envelope glycoprotein gp120 protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 6647
95 % 4 8 7152
90 % 4 8 7145
70 % 7 18 2740
50 % 7 18 2679
40 % 7 18 2695
30 % 7 18 2674

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures