Sequence Similarity Clusters for the Entities in PDB 1F58

Entity #1 | Chains: L
PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30891
95 % 1 3 25972 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.8
PDBFlex
90 % 12 110 158
70 % 500 2236 2
50 % 636 2821 2
40 % 636 2821 2
30 % 1309 5715 1
Entity #2 | Chains: H
PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30203
95 % 1 3 26225 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.7
PDBFlex
90 % 1 3 26780
70 % 625 2735 1
50 % 663 2852 1
40 % 663 2852 1
30 % 1310 5715 1
Entity #3 | Chains: P
Envelope glycoprotein gp120 protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 6552
95 % 4 8 7189
90 % 4 8 7184
70 % 7 18 2702
50 % 7 18 2682
40 % 7 18 2672
30 % 7 18 2644

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures