Sequence Similarity Clusters for the Entities in PDB 1F58

Entity #1 | Chains: L
PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28006
95 % 1 3 24647 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.8
PDBFlex
90 % 12 111 153
70 % 608 2696 1
50 % 1258 5473 1
40 % 1482 6175 1
30 % 1792 7645 1
Entity #2 | Chains: H
PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28429
95 % 1 3 24968 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.7
PDBFlex
90 % 1 3 24109
70 % 610 2655 2
50 % 1259 5473 1
40 % 1483 6175 1
30 % 1793 7645 1
Entity #3 | Chains: P
Envelope glycoprotein gp120 protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 6820
95 % 4 8 6949
90 % 4 8 6919
70 % 5 13 3591
50 % 7 18 2505
40 % 7 18 2454
30 % 7 18 2300

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures