Sequence Similarity Clusters for the Entities in PDB 1F58

Entity #1 | Chains: L
PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27735
95 % 1 3 23120 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.8
PDBFlex
90 % 9 99 156
70 % 514 2329 1
50 % 1060 4717 1
40 % 1060 4717 1
30 % 1166 5571 1
Entity #2 | Chains: H
PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27468
95 % 1 3 22933 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.7
PDBFlex
90 % 1 3 22241
70 % 514 2282 2
50 % 1061 4717 1
40 % 1061 4717 1
30 % 1167 5571 1
Entity #3 | Chains: P
PROTEIN (EXTERIOR MEMBRANE GLYCOPROTEIN(GP120)) protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 9988
95 % 3 6 10048
90 % 3 6 9927
70 % 6 15 3012
50 % 6 15 2963
40 % 6 15 2924
30 % 6 15 2737

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.