Sequence Similarity Clusters for the Entities in PDB 1F58

Entity #1 | Chains: L
PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28715
95 % 1 3 23900 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.8
PDBFlex
90 % 11 105 152
70 % 561 2474 1
50 % 1157 5011 1
40 % 1157 5011 1
30 % 1304 5941 1
Entity #2 | Chains: H
PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28441
95 % 1 3 23706 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.7
PDBFlex
90 % 1 3 22965
70 % 561 2424 2
50 % 1158 5011 1
40 % 1158 5011 1
30 % 1305 5941 1
Entity #3 | Chains: P
PROTEIN (EXTERIOR MEMBRANE GLYCOPROTEIN(GP120)) protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 10392
95 % 3 6 10396
90 % 3 6 10269
70 % 6 16 2850
50 % 6 16 2810
40 % 6 16 2760
30 % 6 16 2593

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures