Sequence Similarity Clusters for the Entities in PDB 1F58

Entity #1 | Chains: L
PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26842
95 % 1 3 22377 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.8
PDBFlex
90 % 8 89 167
70 % 403 1841 2
50 % 1019 4537 1
40 % 1019 4537 1
30 % 1117 5342 1
Entity #2 | Chains: H
PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 26581
95 % 1 3 22192 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.7
PDBFlex
90 % 1 3 21540
70 % 494 2197 1
50 % 1020 4537 1
40 % 1020 4537 1
30 % 1118 5342 1
Entity #3 | Chains: P
PROTEIN (EXTERIOR MEMBRANE GLYCOPROTEIN(GP120)) protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 9686
95 % 3 6 9727
90 % 3 6 9616
70 % 6 15 2925
50 % 6 15 2883
40 % 6 15 2843
30 % 6 15 2659

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.