Sequence Similarity Clusters for the Entities in PDB 1F58

Entity #1 | Chains: L
PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27451
95 % 1 3 24157 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.8
PDBFlex
90 % 12 109 151
70 % 592 2621 1
50 % 1226 5323 1
40 % 1447 6003 1
30 % 1756 7460 1
Entity #2 | Chains: H
PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27869
95 % 1 3 24471 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.7
PDBFlex
90 % 1 3 23662
70 % 594 2580 2
50 % 1227 5323 1
40 % 1448 6003 1
30 % 1757 7460 1
Entity #3 | Chains: P
Envelope glycoprotein gp120 protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 6848
95 % 4 8 6977
90 % 4 8 6953
70 % 5 13 3516
50 % 7 18 2457
40 % 7 18 2412
30 % 7 18 2264

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures