Sequence Similarity Clusters for the Entities in PDB 1F58

Entity #1 | Chains: L
PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28355
95 % 1 3 23604 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.8
PDBFlex
90 % 11 103 153
70 % 544 2426 1
50 % 1122 4913 1
40 % 1122 4913 1
30 % 1233 5780 1
Entity #2 | Chains: H
PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 28083
95 % 1 3 23411 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 2.7
PDBFlex
90 % 1 3 22684
70 % 544 2376 2
50 % 1123 4913 1
40 % 1123 4913 1
30 % 1234 5780 1
Entity #3 | Chains: P
PROTEIN (EXTERIOR MEMBRANE GLYCOPROTEIN(GP120)) protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 10216
95 % 3 6 10245
90 % 3 6 10121
70 % 6 16 2815
50 % 6 16 2777
40 % 6 16 2729
30 % 6 16 2565

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures