Sequence Similarity Clusters for the Entities in PDB 1F4Y

Entity #1 | Chains: L
ANTIBODY S-20-4, FAB FRAGMENT, LIGHT CHAIN protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61031
95 % 25 39 453 Flexibility: Low
Max RMSD: 8.7, Avg RMSD: 2.3
PDBFlex
90 % 30 45 393
70 % 1651 2327 1
50 % 3350 4713 1
40 % 3350 4713 1
30 % 3962 5567 1
Entity #2 | Chains: H
ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27709
95 % 3 3 23096 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 3 22367
70 % 1615 2280 2
50 % 3351 4713 1
40 % 3351 4713 1
30 % 3963 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.