Sequence Similarity Clusters for the Entities in PDB 1F4Y

Entity #1 | Chains: L
ANTIBODY S-20-4, FAB FRAGMENT, LIGHT CHAIN protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63150
95 % 25 39 505 Flexibility: Low
Max RMSD: 8.7, Avg RMSD: 2.3
PDBFlex
90 % 30 45 459
70 % 1770 2479 1
50 % 3592 5021 1
40 % 3592 5021 1
30 % 4271 5951 1
Entity #2 | Chains: H
ANTIBODY S-20-4, FAB FRAGMENT, HEAVY CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28755
95 % 3 3 23930 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 3 23148
70 % 1731 2429 2
50 % 3593 5021 1
40 % 3593 5021 1
30 % 4272 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures