Sequence Similarity Clusters for the Entities in PDB 1F3U

Entity #1 | Chains: A,C,E,G
TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23571
95 % 1 1 20175 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 19626
70 % 1 1 18034
50 % 1 1 15666
40 % 1 1 13959
30 % 1 1 11944
Entity #2 | Chains: B,D,F,H
TRANSCRIPTION INITIATION FACTOR IIF, ALPHA SUBUNIT protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22171
95 % 1 1 19170 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.6
PDBFlex
90 % 1 1 18671
70 % 1 1 17234
50 % 1 1 14970
40 % 1 1 13328
30 % 1 1 11414

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.