Sequence Similarity Clusters for the Entities in PDB 1F3U

Entity #1 | Chains: A,C,E,G
TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24088
95 % 1 1 20572 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 19996
70 % 1 1 18385
50 % 1 1 15953
40 % 1 1 14201
30 % 1 1 12147
Entity #2 | Chains: B,D,F,H
TRANSCRIPTION INITIATION FACTOR IIF, ALPHA SUBUNIT protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22677
95 % 1 1 19552 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.6
PDBFlex
90 % 1 1 19025
70 % 1 1 17575
50 % 1 1 15251
40 % 1 1 13565
30 % 1 1 11610

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures