Sequence Similarity Clusters for the Entities in PDB 1F3U

Entity #1 | Chains: A,C,E,G
TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24498
95 % 1 1 20896 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.1
PDBFlex
90 % 1 1 20303
70 % 1 1 18654
50 % 1 1 16171
40 % 1 1 14392
30 % 1 1 12306
Entity #2 | Chains: B,D,F,H
TRANSCRIPTION INITIATION FACTOR IIF, ALPHA SUBUNIT protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23080
95 % 1 1 19869 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.6
PDBFlex
90 % 1 1 19326
70 % 1 1 17839
50 % 1 1 15465
40 % 1 1 13751
30 % 1 1 11764

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures