Sequence Similarity Clusters for the Entities in PDB 1F3M

Entity #1 | Chains: A,B
SERINE/THREONINE-PROTEIN KINASE PAK-ALPHA protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47967
95 % 1 1 35822 Flexibility: Medium
Max RMSD: 6.3, Avg RMSD: 6.3
PDBFlex
90 % 1 1 34226
70 % 1 1 30437
50 % 1 1 26027
40 % 1 1 22962
30 % 1 1 19457
Entity #2 | Chains: C,D
SERINE/THREONINE-PROTEIN KINASE PAK-ALPHA protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26565
95 % 26 27 1073 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.7
PDBFlex
90 % 26 27 1094
70 % 26 27 1133
50 % 49 57 655
40 % 108 134 224
30 % 2961 3879 2

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.