Sequence Similarity Clusters for the Entities in PDB 1F3M

Entity #1 | Chains: A,B
SERINE/THREONINE-PROTEIN KINASE PAK-ALPHA protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32982
95 % 1 1 28436 Flexibility: Medium
Max RMSD: 6.3, Avg RMSD: 6.3
PDBFlex
90 % 1 1 27333
70 % 1 1 24656
50 % 1 1 21154
40 % 1 1 18666
30 % 1 1 19688
Entity #2 | Chains: C,D
SERINE/THREONINE-PROTEIN KINASE PAK-ALPHA protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 12 3527
95 % 26 27 1148 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.7
PDBFlex
90 % 27 28 1138
70 % 27 28 1177
50 % 54 64 614
40 % 115 143 232
30 % 3281 4300 2

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures