Sequence Similarity Clusters for the Entities in PDB 1F3M

Entity #1 | Chains: A,B
SERINE/THREONINE-PROTEIN KINASE PAK-ALPHA protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48549
95 % 1 1 36245 Flexibility: Medium
Max RMSD: 6.3, Avg RMSD: 6.3
PDBFlex
90 % 1 1 34611
70 % 1 1 30759
50 % 1 1 26300
40 % 1 1 23196
30 % 1 1 19653
Entity #2 | Chains: C,D
SERINE/THREONINE-PROTEIN KINASE PAK-ALPHA protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26898
95 % 26 27 1085 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.7
PDBFlex
90 % 27 28 1086
70 % 27 28 1124
50 % 51 59 639
40 % 110 136 228
30 % 2994 3924 2

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures