Sequence Similarity Clusters for the Entities in PDB 1F3M

Entity #1 | Chains: A,B
SERINE/THREONINE-PROTEIN KINASE PAK-ALPHA protein, length: 80 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46733
95 % 1 1 34927 Flexibility: Medium
Max RMSD: 6.3, Avg RMSD: 6.3
PDBFlex
90 % 1 1 33393
70 % 1 1 29772
50 % 1 1 25502
40 % 1 1 22496
30 % 1 1 19047
Entity #2 | Chains: C,D
SERINE/THREONINE-PROTEIN KINASE PAK-ALPHA protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25762
95 % 25 26 1096 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 2.8
PDBFlex
90 % 25 26 1113
70 % 25 26 1151
50 % 46 53 680
40 % 103 127 234
30 % 2868 3759 2

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.