Sequence Similarity Clusters for the Entities in PDB 1F3J

Entity #1 | Chains: A,D
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 4215
95 % 8 10 4622 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 21 26 1422
70 % 41 48 705
50 % 138 161 184
40 % 138 161 195
30 % 287 334 98
Entity #2 | Chains: B,E
MHC CLASS II NOD protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 13379
95 % 5 7 8087 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 14 17 3107
70 % 130 152 161
50 % 138 161 183
40 % 138 161 194
30 % 288 334 98
Entity #3 | Chains: P,Q
LYSOZYME C protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures