Sequence Similarity Clusters for the Entities in PDB 1F3J

Entity #1 | Chains: A,D
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 4978
95 % 5 7 5670 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 18 23 1418
70 % 37 44 726
50 % 123 146 175
40 % 123 146 191
30 % 257 304 99
Entity #2 | Chains: B,E
MHC CLASS II NOD protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12446
95 % 2 4 11987 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 11 14 3491
70 % 115 137 164
50 % 123 146 174
40 % 123 146 190
30 % 258 304 99
Entity #3 | Chains: P,Q
LYSOZYME C protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.