Sequence Similarity Clusters for the Entities in PDB 1F3J

Entity #1 | Chains: A,D
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 4517
95 % 5 7 5172
90 % 18 23 1292
70 % 32 39 723
50 % 115 137 176
40 % 115 137 190
30 % 241 286 74
Entity #2 | Chains: B,E
MHC CLASS II NOD protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 11364
95 % 2 4 11032
90 % 11 14 3191
70 % 107 128 161
50 % 115 137 175
40 % 115 137 189
30 % 242 286 74
Entity #3 | Chains: P,Q
LYSOZYME C protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.