Sequence Similarity Clusters for the Entities in PDB 1F3J

Entity #1 | Chains: A,D
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 4736
95 % 5 7 5407
90 % 18 23 1358
70 % 35 42 725
50 % 120 142 177
40 % 120 142 191
30 % 251 296 99
Entity #2 | Chains: B,E
MHC CLASS II NOD protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 11934
95 % 2 4 11498
90 % 11 14 3373
70 % 112 133 164
50 % 120 142 176
40 % 120 142 190
30 % 252 296 99
Entity #3 | Chains: P,Q
LYSOZYME C protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.