Sequence Similarity Clusters for the Entities in PDB 1F3J

Entity #1 | Chains: A,D
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 5179
95 % 5 7 5883 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 18 23 1472
70 % 37 44 756
50 % 126 149 180
40 % 126 149 196
30 % 263 310 98
Entity #2 | Chains: B,E
MHC CLASS II NOD protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 12863
95 % 2 4 12392 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 11 14 3600
70 % 118 140 164
50 % 126 149 179
40 % 126 149 195
30 % 264 310 98
Entity #3 | Chains: P,Q
LYSOZYME C protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.